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Liam development #40

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merged 5 commits into from
Nov 23, 2015
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LiamFengLin
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Some refactors; added across-group analysis, pca, and some simplification to kmeans analysis.

@lynnzhao92
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Thx Liam!

@lynnzhao92
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We should include this "nibabel==2.0.1" in the requirement.

result_comp_1 = result[...,1].reshape(data.shape[0:-1])
result_comp_2 = result[...,2].reshape(data.shape[0:-1])
# Chose cutoff = 5500 from the histogram
cutoff = 5500
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the cutoff we used is 5000

lynnzhao92 added a commit that referenced this pull request Nov 23, 2015
@lynnzhao92 lynnzhao92 merged commit 9bba4e6 into berkeley-stat159:test Nov 23, 2015
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