Merge pull request #15 from AlonDaks/alon-dev

Setup data infrastructure for easy data file access
berkeley-stat159 · Nov 8, 2015 · 15a3aba · 15a3aba
2 parents 742f1a9 + 105d9d3
commit 15a3aba
Show file tree

Hide file tree

Showing 4 changed files with 24 additions and 0 deletions.
diff --git a/data/.gitignore b/data/.gitignore
@@ -0,0 +1 @@
+raw/
diff --git a/data/Makefile b/data/Makefile
@@ -3,3 +3,6 @@ data:
 
 validate:
 	python data.py
+
+README.pdf: README.md
+	pandoc -o README.pdf README.md
diff --git a/data/README.md b/data/README.md
@@ -0,0 +1,6 @@
+# data
+
+If the path to your data on your computer is `/Volumes/Passport/fmri_data`, then you can
+create a symbolic link via:
+
+    $ ln -s /Volumes/Passport/fmri_data raw
diff --git a/data/data_path.json b/data/data_path.json
@@ -0,0 +1,14 @@
+{
+	"bold_dico_7Tad2grpbold7Tad": {
+		"sub1" : {
+			"run1": "data/raw/sub001/BOLD/task001_run001/bold_dico_dico7Tad2grpbold7Tad.nii",
+			"run2": "data/raw/sub001/BOLD/task001_run002/bold_dico_dico7Tad2grpbold7Tad.nii",
+			"run3": "data/raw/sub001/BOLD/task001_run003/bold_dico_dico7Tad2grpbold7Tad.nii",
+			"run4": "data/raw/sub001/BOLD/task001_run004/bold_dico_dico7Tad2grpbold7Tad.nii",
+			"run5": "data/raw/sub001/BOLD/task001_run005/bold_dico_dico7Tad2grpbold7Tad.nii",
+			"run6": "data/raw/sub001/BOLD/task001_run006/bold_dico_dico7Tad2grpbold7Tad.nii",
+			"run7": "data/raw/sub001/BOLD/task001_run007/bold_dico_dico7Tad2grpbold7Tad.nii",
+			"run8": "data/raw/sub001/BOLD/task001_run008/bold_dico_dico7Tad2grpbold7Tad.nii"
+		}
+	}
+}