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tests for preprocess #81

Merged
merged 7 commits into from
Dec 14, 2015
Merged

tests for preprocess #81

merged 7 commits into from
Dec 14, 2015

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jodreen
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@jodreen jodreen commented Dec 13, 2015

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…lambda

* 'master' of https://github.com/berkeley-stat159/project-lambda: (22 commits)
  Fixed tests for data_path
  changed requirements.txt
  updated report.tex to include reproduction analysis
  Wrote tests for data_path.py
  Updated data_path.py and added documentation to analyze_similarity.py
  Updated documentation for data_path.py
  Added documentation to similarity.py
  Added documentation to inter_run_diagnostics.py
  Updated documentation for data_path.py
  Added documentation to svm.py
  Added documentation to data_path.py
  Removed unused function following code review
  wrote a script to produce plots and figures for our reproduction work
  fixed imports in similarity.py to not go past 80 chars
  similarity.py computes correlations for all pairs of SUBJECTS when run from command line
  correlation script runnable from command line and saves file to processed directory
  wrote custom vectorized correlation
  Rewrote parts of similarity.py to handle intra-run correlation
  Added main method to preprocess.py
  Removed parallelism from preprocess.py and added main method
  ...
@AlonDaks
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LGTM. Lets address linear_modeling tests in a different PR.

AlonDaks added a commit that referenced this pull request Dec 14, 2015
[WIP] tests for preprocess
@AlonDaks AlonDaks merged commit 3bd3483 into berkeley-stat159:master Dec 14, 2015
@jodreen jodreen changed the title [WIP] tests for preprocess tests for preprocess Dec 14, 2015
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