GitHub - biflorenzi/Metabolic_modeling: In this repository the metabolic model of F. prausnitzii generated by Heinken, et al 2014 (“Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe.”, https://doi.org/10.1128/JB.01780-14) was validated with in-vitro growth data. 3 python jupyter notebooks, one for each medium, and a R jupyter notebook contain the main analysis of this project.

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In this repository the metabolic model of F. prausnitzii generated by Heinken, et al 2014 (“Functional metabolic map of Faecalibacterium prausnitzii, a beneficial human gut microbe.”, https://doi.org/10.1128/JB.01780-14) was validated with in-vitro growth data. 3 python jupyter notebooks, one for each medium, and a R jupyter notebook contain the…

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
Data		Data
Growthcurves.R		Growthcurves.R
Growthrates.ipynb		Growthrates.ipynb
Metabolic_flux_mgam.ipynb		Metabolic_flux_mgam.ipynb
Metabolic_flux_mmcb.ipynb		Metabolic_flux_mmcb.ipynb
Metabolic_flux_rcm.ipynb		Metabolic_flux_rcm.ipynb
Paper IBP.pdf		Paper IBP.pdf
Poster IBP.pdf		Poster IBP.pdf
functions.py		functions.py
plots.R		plots.R