/
AlignmentRecordField.scala
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/
AlignmentRecordField.scala
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/**
* Licensed to Big Data Genomics (BDG) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The BDG licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package org.bdgenomics.adam.projections
import org.bdgenomics.formats.avro.AlignmentRecord
/**
* Enumeration of AlignmentRecord field names for predicates and projections.
*/
object AlignmentRecordField extends FieldEnumeration(AlignmentRecord.SCHEMA$) {
val readInFragment, contigName, start, oldPosition, end, mapq, readName, sequence, qual, cigar, oldCigar, basesTrimmedFromStart, basesTrimmedFromEnd, readPaired, properPair, readMapped, mateMapped, failedVendorQualityChecks, duplicateRead, readNegativeStrand, mateNegativeStrand, primaryAlignment, secondaryAlignment, supplementaryAlignment, mismatchingPositions, origQual, attributes, recordGroupName, recordGroupSample, mateAlignmentStart, mateAlignmentEnd, mateContigName, inferredInsertSize = SchemaValue
}