• ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

    Scala 632 231 Updated Jun 27, 2017
  • A scalable genome browser. Apache 2 licensed.

    Scala 43 16 Updated Jun 23, 2017
  • Conversions to and from Big Data Genomics Avro Formats. Apache 2 licensed.

    Java 2 Updated Jun 21, 2017
  • Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 25 32 Updated Jun 21, 2017
  • Big Data Genomics ADAM Pipe API wrappers for bioinformatics tools. Apache 2 licensed.

    Scala 4 4 Updated Jun 20, 2017
  • A Variant Caller, Distributed. Apache 2 licensed.

    Scala 58 38 Updated Jun 7, 2017
  • Scala 4 11 Updated May 3, 2017
  • Web Site for the Big Data Genomics Group

    HTML 9 6 Updated Apr 11, 2017
  • General (non-omics) code used across BDG products. Apache 2 licensed.

    Scala 19 23 Updated Mar 21, 2017
  • A refreshing treatment for all quality control ailments. Apache 2 licensed.

    Scala 2 6 Updated Oct 13, 2016
  • Exemplar API that mediates Toil with a WDL front-end and workflow tracking.

    Java 1 Updated Jul 31, 2016
  • Parallel alignment using SNAP on ADAM. Apache 2 licensed.

    Scala 3 2 Updated Jul 6, 2016
  • An RNA pipeline built on top of ADAM. Apache 2 licensed.

    Scala 17 15 Updated Apr 28, 2016
  • Ready-to-go Parquet-formatted public 'omics datasets

    Python 27 7 Updated Nov 2, 2015
  • Recipes using BDG projects. Apache 2 licensed.

    Shell 4 3 Updated Mar 25, 2015
  • Assembler for PacBio reads. Apache 2 licensed.

    Scala 4 3 Updated Mar 13, 2015
  • Read error correction utilities.

    2 Updated Mar 1, 2015
  • Notebook tools for Big Data Genomics. Apache 2 licensed.

    JavaScript 3 467 Updated Feb 28, 2015
  • Utility classes for wrapping services or other interfaces around a Spark/ADAM cluster. Apache 2 licensed.

    Java 5 7 Updated Nov 17, 2014