• ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark and Parquet. Apache 2 licensed.

    Scala 673 252 Apache-2.0 Updated Nov 22, 2017
  • A scalable genome browser. Apache 2 licensed.

    Jupyter Notebook 48 19 Apache-2.0 Updated Nov 21, 2017
  • Scala 5 12 Apache-2.0 Updated Nov 17, 2017
  • Big Data Genomics ADAM Pipe API wrappers for bioinformatics tools. Apache 2 licensed.

    Scala 7 5 Apache-2.0 Updated Nov 8, 2017
  • Toil workflows for bigdatagenomics tools. Apache 2 licensed.

    Python 2 4 Apache-2.0 Updated Nov 7, 2017
  • Conversions to and from Big Data Genomics Avro Formats. Apache 2 licensed.

    Java 4 Apache-2.0 Updated Oct 27, 2017
  • A Variant Caller, Distributed. Apache 2 licensed.

    Scala 64 38 Apache-2.0 Updated Oct 26, 2017
  • General (non-omics) code used across BDG products. Apache 2 licensed.

    Scala 20 23 Apache-2.0 Updated Oct 26, 2017
  • Open source formats for scalable genomic processing systems using Avro. Apache 2 licensed.

    Shell 26 34 Apache-2.0 Updated Oct 26, 2017
  • deca

    Forked from mlinderm/deca

    Distributed exome CNV analyzer. Apache 2 licensed.

    Scala 1 3 Updated Sep 27, 2017
  • Web Site for the Big Data Genomics Group

    HTML 9 6 Updated Apr 11, 2017
  • A refreshing treatment for all quality control ailments. Apache 2 licensed.

    Scala 2 6 Apache-2.0 Updated Oct 13, 2016
  • Exemplar API that mediates Toil with a WDL front-end and workflow tracking.

    Java 1 Apache-2.0 Updated Aug 1, 2016
  • An RNA pipeline built on top of ADAM. Apache 2 licensed.

    Scala 18 15 Apache-2.0 Updated Apr 28, 2016
  • Ready-to-go Parquet-formatted public 'omics datasets

    Python 28 7 Apache-2.0 Updated Nov 2, 2015
  • Recipes using BDG projects. Apache 2 licensed.

    Shell 4 3 Apache-2.0 Updated Mar 25, 2015
  • Assembler for PacBio reads. Apache 2 licensed.

    Scala 4 3 Apache-2.0 Updated Mar 14, 2015
  • Read error correction utilities.

    2 Apache-2.0 Updated Mar 1, 2015
  • Notebook tools for Big Data Genomics. Apache 2 licensed.

    JavaScript 3 504 Apache-2.0 Updated Mar 1, 2015
  • Utility classes for wrapping services or other interfaces around a Spark/ADAM cluster. Apache 2 licensed.

    Java 5 8 Apache-2.0 Updated Nov 17, 2014