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Commits on Jul 9, 2018

• Fixed parameter names in method documentations.

  

  jondeaton

  authored and

  fnothaft

  committedJul 9, 2018
  4cea777

Commits on Jun 9, 2018

• [AVOCADO-291] Add more helpful error message when read groups are missing.

  

  Frank Austin Nothaft

  authored and

  fnothaft

  committedJun 9, 2018
  632502a

• [AVOCADO-298] Clean up Sphinx documentation build.

  

  Frank Austin Nothaft

  authored and

  fnothaft

  committedJun 9, 2018
  d1175fe

• [AVOCADO-299] Bump to ADAM 0.24.0.

  

  Frank Austin Nothaft

  authored and

  fnothaft

  committedJun 9, 2018
  dbb7bbb

Commits on Feb 18, 2018

• [AVOCADO-293] Use Spark SQL to filter variants prior to squaring off.

  

  Frank Austin Nothaft

  authored and

  fnothaft

  committedFeb 18, 2018
  e0979dd

Commits on Feb 17, 2018

• [AVOCADO-289] Reduce the amount of memory consumed by observations.

  

  Frank Austin Nothaft

  authored and

  fnothaft

  committedFeb 17, 2018
  78f71e1

Commits on Jan 9, 2018

• Modifying pom.xml files for new development after 0.1.0 release.

  fnothaft

  committedJan 9, 2018
  63e1bf1

• Missing signing profile.

  fnothaft

  committedJan 9, 2018
  56edbd9

Commits on Jan 8, 2018

• Fix bad targets in Scala 2.11 release.

  fnothaft

  committedJan 8, 2018
  48bfa01

• Skip tests in release plugin.

  fnothaft

  committedJan 8, 2018
  2782be9

• Debug release running tests.

  fnothaft

  committedJan 8, 2018
  4c8980a

• Try to skip tests again.

  fnothaft

  committedJan 8, 2018
  c9ac312

• Try, try again to skip tests during release.

  fnothaft

  committedJan 8, 2018
  9e973e2

• Specify maven release plugin version.

  fnothaft

  committedJan 8, 2018
  b761271

• Remove tests from release, try 2.

  fnothaft

  committedJan 8, 2018
  64bfeaf

• Add updated release scripts.

  Frank Austin Nothaft

  committedJan 8, 2018
  6b6ada5

• Removing old release scripts.

  Frank Austin Nothaft

  committedJan 8, 2018
  208e265

• Remove pandoc from distribution package.

  Frank Austin Nothaft

  committedJan 8, 2018
  821534d

• [AVOCADO-288] Documented gVCF variant and genotype extraction flow.

  Frank Austin Nothaft

  committedJan 8, 2018
  9c6c86c

• [AVOCADO-285] Fix bad argument names/argument name documentation.

  Frank Austin Nothaft

  committedJan 8, 2018
  fa1dce8

• Fixing configuration file.

  Frank Austin Nothaft

  committedJan 8, 2018
  ddfb8c8

• Initial Sphinx documentation.

  Frank Austin Nothaft

  committedJan 8, 2018
  2ef5254

Commits on Jan 5, 2018

• Rewrite and update README.md.

  Frank Austin Nothaft

  committedJan 5, 2018
  b376bbc

• Remove old Markdown documentation.

  Frank Austin Nothaft

  committedJan 5, 2018
  228d0cc

• Add ability to extract genotypes from a gVCF independent of joint genotyping.

  fnothaft

  committedJan 5, 2018
  b6143ef

• Attach sample to gVCF output.

  fnothaft

  committedJan 5, 2018
  7ab4a1d

• gVCF output should not rewrite hets if alt allele is undefined.

  fnothaft

  committedJan 5, 2018
  ee36a0b

• WAR issue relating to bigdatagenomics/adam#1776.

  fnothaft

  committedJan 5, 2018
  9623993

• [AVOCADO-272] Support variable copy number when genotyping.

  fnothaft

  committedJan 5, 2018
  8a46e75

Commits on Jan 4, 2018

• Fix syntax error in scripts/jenkins_test

  

  Frank Austin Nothaft

  authored and

  fnothaft

  committedJan 4, 2018
  1d06b28

• [AVOCADO-280] Bump to ADAM 0.23.0 release.

  

  Frank Austin Nothaft

  authored and

  fnothaft

  committedJan 4, 2018
  57a8d9b

Commits on Oct 26, 2017

• Adding code of contact adapted from the Contributor Convenant, version 1.4.

  

  heuermh

  authored and

  fnothaft

  committedOct 26, 2017
  fa192c0

Commits on Oct 24, 2017

• Add code for squaring off genotypes that include reference models.

  fnothaft

  committedOct 24, 2017
  141881c

• [AVOCADO-249] Support BP resolution gVCF output.

  fnothaft

  committedOct 24, 2017
  0144e1a

Commits on Oct 16, 2017

• [AVOCADO-269] Add thresholds to DiscoverVariant CLI.

  fnothaft

  committedOct 16, 2017
  5c109cc

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