adapt testing because of previously missing Description field

bihealth · Jan 29, 2024 · fa8320d · fa8320d
1 parent 825d8e5
commit fa8320d
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Showing 3 changed files with 6 additions and 5 deletions.
diff --git a/tests/test_parse_investigation.py b/tests/test_parse_investigation.py
@@ -909,7 +909,7 @@ def test_parse_assays_investigation(assays_investigation_file):
     )
     assert record[1].category == ParseIsatabWarning
     assert str(record[1].message) == msg
-    msg = "No assays declared in study 's_assays' of investigation 'i_assays.txt'"
+    msg = 'No assays declared in study "s_assays" of investigation "i_assays.txt"'
     assert record[2].category == AdvisoryIsaValidationWarning
     assert str(record[2].message) == msg
     msg = "Study identifier used more than once: s_assays"

diff --git a/tests/test_write_assay.py b/tests/test_write_assay.py
@@ -180,8 +180,9 @@ def test_assay_writer_gelelect(gelelect_investigation_file, tmp_path):
     assert str(record[0].message) == msg
     msg = (
         "Investigation with only one study contains metadata:\n\tID:\t1551099271112"
-        "\n\tTitle:\tInvestigation\n\tPath:\ti_Investigation.txt\n\tSubmission Date:\t\n\tPublic Release"
-        " Date:\tNone\n\tPrefer recording metadata in the study section."
+        "\n\tTitle:\tInvestigation\n\tPath:\ti_Investigation.txt\n\tDescription:\t\n"
+        "\tSubmission Date:\tNone\n\tPublic Release Date:\tNone\n"
+        "\tPrefer recording metadata in the study section."
     )
     assert record[1].category == ModerateIsaValidationWarning
     assert str(record[1].message) == msg

diff --git a/tests/test_write_study.py b/tests/test_write_study.py
@@ -88,8 +88,8 @@ def test_study_writer_gelelect(gelelect_investigation_file, tmp_path):
     assert str(record[0].message) == msg
     msg = (
         "Investigation with only one study contains metadata:\n\tID:\t1551099271112\n\tTitle:\t"
-        "Investigation\n\tPath:\ti_Investigation.txt\n\tSubmission Date:\t\n\tPublic Release "
-        "Date:\tNone\n\tPrefer recording metadata in the study section."
+        "Investigation\n\tPath:\ti_Investigation.txt\n\tDescription:\t\n\tSubmission Date:\tNone\n"
+        "\tPublic Release Date:\tNone\n\tPrefer recording metadata in the study section."
     )
     assert record[1].category == ModerateIsaValidationWarning
     assert str(record[1].message) == msg