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Implement transcript database building #1

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2 tasks
holtgrewe opened this issue Mar 3, 2023 · 0 comments · Fixed by #8
Closed
2 tasks

Implement transcript database building #1

holtgrewe opened this issue Mar 3, 2023 · 0 comments · Fixed by #8

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@holtgrewe
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We need a fast database for transcripts and sequences. We have comprehensive transcript database solutions via hgvs. We have made good experience with flatbuffers for fast access.

  • create flatbuffers based data structures for transcript information and sequence
  • create a CLI for importing transcripts via uta and cdot
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feat: transcript database building (#1) varfish-org/mehari
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@holtgrewe