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Reintroduced hack to make snappy-vcf_sort available from wrapper env.
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eudesbarbosa committed Apr 27, 2022
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3 changes: 3 additions & 0 deletions snappy_wrappers/wrappers/freebayes/wrapper.py
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Expand Up @@ -61,6 +61,9 @@
# Export library
export LD_LIBRARY_PATH=$(dirname $(which bgzip))/../lib
# Hack: get back bin directory of base/root environment
export PATH=$PATH:$(dirname $(dirname $(which conda)))/bin
export TMPDIR=$(mktemp -d)
trap "rm -rf $TMPDIR" EXIT
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