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Cosmetics.
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eudesbarbosa committed Oct 31, 2022
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# -*- coding: utf-8 -*-
"""Implementation of the ``helper_gcnv_model_target_seq`` step
The ``helper_gcnv_model_wgs`` step takes as the input the results of the ``ngs_mapping`` step
(aligned germline reads) and builds a model that can be used by GATK4 gCNV for a particular
The ``helper_gcnv_model_target_seq`` step takes as the input the results of the ``ngs_mapping``
step (aligned germline reads) and builds a model that can be used by GATK4 gCNV for a particular
library kit.
==========
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from snappy_pipeline.workflows.ngs_mapping import NgsMappingWorkflow
from snappy_pipeline.workflows.targeted_seq_cnv_calling import GcnvStepPart

#: Default configuration for the helper_gcnv_model_wgs schema
#: Default configuration for the helper_gcnv_model_target_seq schema
DEFAULT_CONFIG = r"""
# Default configuration helper_gcnv_model_target_seq
step_config:
helper_gcnv_model_target_seq:
path_ngs_mapping: ../ngs_mapping # REQUIRED
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