Removed unnacessary code.

snappy_pipeline/workflows/adapter_trimming/__init__.py

@@ -142,7 +142,6 @@
 from biomedsheets.shortcuts import GenericSampleSheet
 from snakemake.io import expand
 
-from snappy_pipeline.base import UnsupportedActionException
 from snappy_pipeline.utils import dictify, listify
 from snappy_pipeline.workflows.abstract import (
     BaseStep,
@@ -537,15 +536,9 @@ def get_resource_usage(self, action):
         :type action: str
 
         :return: Returns ResourceUsage for step.
-
-        :raises UnsupportedActionException: if action not in class defined list of valid actions.
         """
         # Validate action
         self._validate_action(action)
-        if action not in self.actions:
-            actions_str = ", ".join(self.actions)
-            error_message = f"Action '{action}' is not supported. Valid options: {actions_str}"
-            raise UnsupportedActionException(error_message)
         return ResourceUsage(
             threads=self.config["bbduk"]["num_threads"],
             time="12:00:00",  # 40 hours
@@ -566,15 +559,9 @@ def get_resource_usage(self, action):
         :type action: str
 
         :return: Returns ResourceUsage for step.
-
-        :raises UnsupportedActionException: if action not in class defined list of valid actions.
         """
         # Validate action
         self._validate_action(action)
-        if action not in self.actions:
-            actions_str = ", ".join(self.actions)
-            error_message = f"Action '{action}' is not supported. Valid options: {actions_str}"
-            raise UnsupportedActionException(error_message)
         return ResourceUsage(
             threads=self.config["fastp"]["num_threads"],
             time="12:00:00",  # 60 hours

snappy_pipeline/workflows/gene_expression_quantification/__init__.py

@@ -226,7 +226,6 @@ def _collect_reads(self, wildcards, library_name, prefix):
 
         Yields paths to right reads if prefix=='right-'
         """
-        _ = library_name
         folder_name = get_ngs_library_folder_name(self.parent.sheets, wildcards.library_name)
         if self.config["path_link_in"]:
             folder_name = library_name

snappy_pipeline/workflows/hla_typing/__init__.py

@@ -177,7 +177,6 @@ def _collect_reads(self, wildcards, library_name, prefix):
 
         Yields paths to right reads if prefix=='right-'
         """
-        _ = library_name
         folder_name = get_ngs_library_folder_name(self.parent.sheets, wildcards.library_name)
         if self.config["path_link_in"]:
             folder_name = library_name

snappy_pipeline/workflows/ngs_data_qc/__init__.py

@@ -102,7 +102,6 @@ def _collect_reads(self, wildcards, library_name, prefix):
 
         Yields paths to right reads if prefix=='right-'
         """
-        _ = library_name
         folder_name = get_ngs_library_folder_name(self.parent.sheets, wildcards.library_name)
         if self.config["path_link_in"]:
             folder_name = library_name

snappy_pipeline/workflows/ngs_mapping/__init__.py

@@ -512,7 +512,6 @@ def _collect_reads(self, wildcards, library_name, prefix):
 
         Yields paths to right reads if prefix=='right-'
         """
-        _ = library_name
         folder_name = get_ngs_library_folder_name(self.parent.sheets, wildcards.library_name)
         if self.config["path_link_in"]:
             folder_name = library_name

snappy_pipeline/workflows/somatic_gene_fusion_calling/__init__.py

@@ -152,7 +152,6 @@ def _collect_reads(self, wildcards, library_name, prefix):
 
         Yields paths to right reads if prefix=='right-'
         """
-        _ = library_name
         folder_name = get_ngs_library_folder_name(self.parent.sheets, wildcards.library_name)
         if self.config["path_link_in"]:
             folder_name = library_name