Fix log message, make isort happy for ebfilter wrapper.

bihealth · Jan 21, 2022 · eff57f3 · eff57f3
1 parent 18b8362
commit eff57f3
Show file tree

Hide file tree

Showing 4 changed files with 4 additions and 3 deletions.
diff --git a/snappy_wrappers/wrappers/eb_filter/wrapper.py b/snappy_wrappers/wrappers/eb_filter/wrapper.py
@@ -3,6 +3,7 @@
 """
 
 import os
+
 from snakemake import shell
 
 __author__ = "Manuel Holtgrewe <manuel.holtgrewe@bihealth.de>"

diff --git a/snappy_wrappers/wrappers/mutect2/contamination/wrapper.py b/snappy_wrappers/wrappers/mutect2/contamination/wrapper.py
@@ -24,7 +24,7 @@
         exec &> >(tee -a "{snakemake.log.log}" >&2)
     else
         rm -f "{snakemake.log.log}" && mkdir -p $(dirname {snakemake.log.log})
-        echo "No tty,.log.logging disabled" >"{snakemake.log.log}"
+        echo "No tty, logging disabled" >"{snakemake.log.log}"
     fi
 fi
 

diff --git a/snappy_wrappers/wrappers/mutect2/filter/wrapper.py b/snappy_wrappers/wrappers/mutect2/filter/wrapper.py
@@ -24,7 +24,7 @@
         exec &> >(tee -a "{snakemake.log.log}" >&2)
     else
         rm -f "{snakemake.log.log}" && mkdir -p $(dirname {snakemake.log.log})
-        echo "No tty,.log.logging disabled" >"{snakemake.log.log}"
+        echo "No tty, logging disabled" >"{snakemake.log.log}"
     fi
 fi
 

diff --git a/snappy_wrappers/wrappers/mutect2/pileup/wrapper.py b/snappy_wrappers/wrappers/mutect2/pileup/wrapper.py
@@ -32,7 +32,7 @@
         exec &> >(tee -a "{snakemake.log.log}" >&2)
     else
         rm -f "{snakemake.log.log}" && mkdir -p $(dirname {snakemake.log.log})
-        echo "No tty,.log.logging disabled" >"{snakemake.log.log}"
+        echo "No tty, logging disabled" >"{snakemake.log.log}"
     fi
 fi