add cytof plugin data file links (#1709)

bihealth · Jun 15, 2023 · f28069d · f28069d
1 parent 58c479d
commit f28069d
Showing 1 changed file with 13 additions and 0 deletions.
diff --git a/samplesheets/assayapps/cytof/plugins.py b/samplesheets/assayapps/cytof/plugins.py
@@ -115,6 +115,7 @@ def update_row(self, row, table, assay):
 
         for i in range(len(row)):
             header = table['field_header'][i]
+            top_header = get_top_header(table, i)
 
             # Create barcode key & antibody panel links in processes
             if (
@@ -145,6 +146,18 @@ def update_row(self, row, table, assay):
                     url=base_url + '/' + mc_assay_name + '/' + row[i]['value'],
                 )
 
+            # Create data file links
+            elif (
+                header['obj_cls'] == 'GenericMaterial'
+                and header['item_type'] == 'DATA'
+                and header['value'].lower() == 'name'
+                and top_header['value'].lower()
+                in ['raw data file', 'derived data file']
+            ):
+                row[i]['link'] = (
+                    base_url + '/' + mc_assay_name + '/' + row[i]['value']
+                )
+
         return row
 
     def update_cache(self, name=None, project=None, user=None):