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Add study app tests with appropriate sample sheets #1523

Closed
3 tasks done
mikkonie opened this issue Nov 4, 2022 · 1 comment
Closed
3 tasks done

Add study app tests with appropriate sample sheets #1523

mikkonie opened this issue Nov 4, 2022 · 1 comment
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@mikkonie
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app: samplesheets Issue in the samplesheets app internal Changes invisible to the user or APIs (e.g. refactoring and optimization)
Milestone
v0.12.1

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@mikkonie
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mikkonie commented Nov 4, 2022 •
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Need to generate ISA-Tabs with appropriate configuration (if not yet there) and test the plugin methods.

Tasks

  • Add sample sheets where applicable
  • Test germline plugin methods
  • Test cancer plugin methods
@mikkonie mikkonie added internal Changes invisible to the user or APIs (e.g. refactoring and optimization) app: samplesheets Issue in the samplesheets app labels Nov 4, 2022
@mikkonie mikkonie added this to the v0.12.1 milestone Nov 4, 2022
@mikkonie mikkonie self-assigned this Nov 4, 2022
mikkonie added a commit that referenced this issue Nov 7, 2022
@mikkonie
add germline study app tests (#1523), refactor
130527e
mikkonie added a commit that referenced this issue Nov 7, 2022
@mikkonie
add cancer study app tests (#1523), refactor
1b12213
@mikkonie
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mikkonie commented Nov 7, 2022

Done, to be merged into dev.

@mikkonie mikkonie closed this as completed Nov 7, 2022
mikkonie added a commit that referenced this issue Nov 8, 2022
@mikkonie
update study sub-apps (#1507, #1519, #1523)
52bcf80
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app: samplesheets Issue in the samplesheets app internal Changes invisible to the user or APIs (e.g. refactoring and optimization)
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v0.12.1
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@mikkonie