Initialize sublime theme auto-detect

dev/scripts/drawHelix.sh

@@ -9,7 +9,8 @@
 ###  |__) | /  \ /__` \ / |\ |  |   /\  \_/ 
 #### |__) | \__/ .__/  |  | \|  |  /~~\ / \ 
 #####=======================================
-##                                      v0.1
+##   biosyntax.org                      v0.1
+#
 #    ABabaian -- artem@rRNA.ca
 #
 #    Props to @darokin for the gif-spiration
@@ -31,29 +32,29 @@ IDX=1 # Initialize print index
 # Terminal Color Palette
 if [[ $(tput colors) == '256' ]]; then
 	# Color Definitions (ANSI_256 Supported)
-	colA='\e[1;38:5:10m'
-	colT='\e[1;38:5:33m'
-	colG='\e[1;38:5:214m'
-	colC='\e[1;38:5:9m'
-	colN1='\e[1;36m'
-	colN2='\e[1;35m'
-	colHelix='\e[1;38:5:250m'
+	colA="$(tput setaf 10)"
+	colT="$(tput setaf 33)"
+	colG="$(tput setaf 214)"
+	colC="$(tput setaf 9)"
+	colN1="$(tput setaf 87)"
+	colN2="$(tput setaf 205)"
+	colHelix=$(tput setaf 250)
 	#colBond1=$colHelix
-	colBond2='\e[1;30m'
-	colBg='\e[38:5:17m'
+	colBond2="$(tput setaf 0)"
+	colBg="$(tput setaf 17)"
 
 else # use System colors
 	# Color Definitions (System Colors)
-	colA='\e[1;32m'
-	colT='\e[1;34m'
-	colG='\e[1;33m'
-	colC='\e[1;31m'
-	colN1='\e[1;36m'
-	colN2='\e[1;35m'
-	colHelix='\e[1;37m'
+	colA="$(tput setaf 2)"
+	colT="$(tput setaf 4)"
+	colG="$(tput setaf 3)"
+	colC="$(tput setaf 1)"
+	colN1="$(tput setaf 6)"
+	colN2="$(tput setaf 5)"
+	colHelix="$(tput setaf 7)"
 	#colBond1=$colHelix
-	colBond2='\e[1;30m'
-	colBg='\e[0m'
+	colBond2="$(tput setaf 0)"
+	colBg="$(tput setaf 0)"
 fi
 
 # DRAW DNA ------------------------------------------------
@@ -119,4 +120,3 @@ do
 		done # BASE
 	fi #N
 done #SEQ
-#

dev/scripts/set_sublime-settings.sh

@@ -0,0 +1,37 @@
+#!/bin/bash
+#
+# Usage:	/.set_sublime-settings.sh
+#			( Run in "$BIOSYNTAX/sublime/" )
+# 
+# bioSyntax.org v0.1
+#
+# Creates a copy of the bioSyntax default settings
+# for each syntax. 
+# 
+# Used to apply changes in "bioSyntax.sublime-settings" 
+# as a default for every syntax
+#
+# Note:
+# Ideally all bioSyntax syntax files will
+# read the same "bioSyntax.sublime-settings" file
+#
+# In *nix this is done with `ln -s ` but that isn't
+# a windows/*.nix compatible way of creating links
+# to the same file.
+#
+
+TEMPLATE='bioSyntax.sublime-settings'
+
+printf " Default bioSyntax.sublime-settings:\t$TEMPLATE\n"
+# Generate a bioSyntax.sublime-settings
+# file if one doesn't exist.
+
+for SYNTAXFILE in $(ls *.sublime-syntax)
+do
+	# Find each syntax definition file
+	SYNTAX=$(basename -as'.sublime-syntax' $SYNTAXFILE)
+	printf " Making .sublime-settings file for:\t$SYNTAX\n"
+
+	cp $TEMPLATE $SYNTAX".sublime-settings" 
+
+done

dev/scripts/set_sublime-settings_TEMPLATE.sublime-settings

@@ -0,0 +1,17 @@
+// GENERIC SYNTAX
+// bioSyntax Settings File
+// These settings override both User and Default settings
+// for this syntax
+{
+	// Sets the colors used within the text area
+    "color_scheme": "Packages/User/bioSyntax.tmTheme",
+
+    // Word Wrapping
+    "word_wrap": "auto",
+
+    // Line Number / Gutter -- User controlled
+    //"line_numbers": true,
+    //"gutter": true,
+    //"margin": 4,
+
+}

sublime/bed.sublime-settings

@@ -0,0 +1,17 @@
+// GENERIC SYNTAX
+// bioSyntax Settings File
+// These settings override both User and Default settings
+// for this syntax
+{
+	// Sets the colors used within the text area
+    "color_scheme": "Packages/User/bioSyntax.tmTheme",
+
+    // Word Wrapping
+    "word_wrap": "auto",
+
+    // Line Number / Gutter -- User controlled
+    //"line_numbers": true,
+    //"gutter": true,
+    //"margin": 4,
+
+}

sublime/bioSyntax.sublime-settings

@@ -0,0 +1,17 @@
+// GENERIC SYNTAX
+// bioSyntax Settings File
+// These settings override both User and Default settings
+// for this syntax
+{
+	// Sets the colors used within the text area
+    "color_scheme": "Packages/User/bioSyntax.tmTheme",
+
+    // Word Wrapping
+    "word_wrap": "auto",
+
+    // Line Number / Gutter -- User controlled
+    //"line_numbers": true,
+    //"gutter": true,
+    //"margin": 4,
+
+}