Installation instructions for lefse in a galaxy environment.

For general information about lefse please go to:

https://github.com/biobakery/biobakery/wiki/lefse

lefse is installed in Galaxy using the Admin tool of Galaxy.

In the


Admin tool

select


Search and browse tool sheds

select the tool shed and enter


lefse

select


preview and install

NOTE: You have to be an administrator in your Galaxy instance to install.

Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
test-data		test-data
Readme_lefse_Galaxy.txt		Readme_lefse_Galaxy.txt
datatypes_conf.xml		datatypes_conf.xml
format_input.py		format_input.py
format_input.xml		format_input.xml
format_input_selector.py		format_input_selector.py
lefse.py		lefse.py
lefse2circlader.py		lefse2circlader.py
lefse_met.png		lefse_met.png
lefse_ove.png		lefse_ove.png
plot_cladogram.py		plot_cladogram.py
plot_cladogram.xml		plot_cladogram.xml
plot_features.py		plot_features.py
plot_features.xml		plot_features.xml
plot_res.py		plot_res.py
plot_res.xml		plot_res.xml
plot_single_feature.xml		plot_single_feature.xml
qiime2lefse.py		qiime2lefse.py
readme.md		readme.md
requirements.txt		requirements.txt
run_lefse.py		run_lefse.py
run_lefse.xml		run_lefse.xml

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