CytoPipelineGUI is the companion package of CytoPipeline, and is used for
interactive visualization. It implements two shiny applications :
- a shiny app for interactive comparison of flow frames that are the results
of CytoProcessingSteps of the same or different CytoPipeline experiments.
It is launched using the following statement:CytoPipelineCheckApp() - a shiny app for interactive visualization and manual adjustments of scale
transformation objects. It is launched using the following statement:
ScaleTransformApp()
The CytoPipelineGUI code is provided under GPL license version 3.0 or
higher. The documentation,
including the manual pages and the vignettes, are distributed under a CC BY-SA
4.0 license.
If you use CytopipelineGUI in your research,
please use the following citation:
Hauchamps P, Bayat B, Delandre S, Hamrouni M, Toussaint M, Temmerman S, Lin D, Gatto L (2024). “CytoPipeline and CytoPipelineGUI: a Bioconductor R package suite for building and visualizing automated pre-processing pipelines for flow cytometry data.” BMC Bioinformatics, 25(1), 80. doi:10.1186/s12859-024-05691-z https://doi.org/10.1186/s12859-024-05691-z.
or run citation("CytoPipelineGUI") to get the bibtex entry.