- Removed legacy function, methods, endpoints, and arguments (@LiNk-NY)
- Use native pipe
|>
instead ofmagrittr::%>%
(@LiNk-NY)
- Defunct legacy function, methods, endpoints, and arguments (@LiNk-NY)
- The GDC API has deprecated the legacy endpoint (#110, @LiNk-NY)
gdc_clinical
handlesNULL
responses when diagnoses are not available for all IDs queried (#109, @zx8754).- Minor updates to somatic mutations vignette and unit tests.
gdcdata
has an ellipses argument to download data from the legacy archive, e.g.,legacy = TRUE
(#84, @LiNk-NY)missing
(is MISSING
) and!missing
(NOT MISSING
) operations implemented for filtering queries, see vignette (#96, @LiNk-NY)gdc-client
version can be validated against last known good version based on data release (#99, @LiNk-NY)
gdc_clinical
usesreadr::type_convert
to handle columns with inconsistent types from the API.- update examples in documentation and vignette based on new data release