sSNAPPY is a package for computing directional pathway perturbation scores from logCPM in RNA-seq data. The final output can be used to test the significance of pathway perturbation at both individual-sample and overall treatment levels.
To install this package, please use BiocManager.
if (!requireNamespace("BiocManager", quietly=TRUE))
install.packages("BiocManager")
BiocManager::install("sSNAPPY")