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@biocommons

biocommons

a collection of open source bioinformatics tools

Pinned repositories

  1. Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`

    Python 146 62

  2. Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image

    Python 39 19

  3. provides common tools and lookup tables used primarily by the hgvs and uta packages

    Python 9 14

  4. non-redundant, compressed, journalled, file-based storage for biological sequences

    Python 23 23

  5. simplified searching, fetching, and parsing records from NCBI using their E-utilities interface

    Python 40 24

  6. OpenAPI-based REST interface to biological sequences and sequence metadata

    Python 1

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