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Medcitations qualifiers types #159

Merged
merged 1 commit into from Nov 18, 2018
Merged

Medcitations qualifiers types #159

merged 1 commit into from Nov 18, 2018

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VincentMatthys
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@VincentMatthys VincentMatthys commented Nov 13, 2018

When parsing MedlineCitation, adding to PubmedArticle class:

  • mesh_qualifiers: (list) extract mesh qualifiers (possible duplicates)
  • pub_types: (list) publication types as listed here
  • chemicals: (list) List of substances

Test have been updated + new test (pmid: 22528466) has been created

@VincentMatthys VincentMatthys changed the title Medcitations qualifiers types WIP - Medcitations qualifiers types Nov 14, 2018
…r medlinecitations

New tests for pmid 22528466 + update existing test for pmid 20412080

Precising alpha utf-8 encoding for python 2.7 compatibility
@reece
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reece commented Nov 18, 2018

Fabulous @VincentMatthys! Thanks for the contribution!

@reece reece closed this Nov 18, 2018
@reece reece reopened this Nov 18, 2018
@reece reece merged commit d28dbd0 into biocommons:master Nov 18, 2018
@VincentMatthys VincentMatthys changed the title WIP - Medcitations qualifiers types Medcitations qualifiers types Nov 19, 2018
@VincentMatthys
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Fabulous @VincentMatthys! Thanks for the contribution!

Thanks for maintaining this tool

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2 participants