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This repository has been archived by the owner on Nov 18, 2023. It is now read-only.
SeqRepo provides a non-redundant, compressed, journalled, file-based storage for biological sequences. SeqRepo also provides a simple interface to this storage. File-based storage is not convenient or efficient for many users. This project will generalize the interface to support other types of backends.
This project has several goals:
Formalize an abstract interface to sequences and sequence slicing as described here and implement it
Investigate and implement additional backends, such as redis or s3, which might be preferable for public access
Consider how to create a fingerprint of an instance of seqrepo data, such as digesting all sequences and aliases to create a fingerprint for the collection
The text was updated successfully, but these errors were encountered:
@reece plans on making an abstract interface before the hackathon. If this happens, then this project will work on implementing caching (Redis/Aurora) and federation (something else)
reece
changed the title
seqrepo refactor for multiple backends
Refactor seqrepo for multiple backends
Jul 24, 2023
Submitter Name
Reece Hart (@reece)
Submitter Affiliation
MyOme
Requested By
seqrepo community
Lead(s)
@reece
biocommons Repo
seqrepo
Project Details
Hackathon Project Slide
SeqRepo provides a non-redundant, compressed, journalled, file-based storage for biological sequences. SeqRepo also provides a simple interface to this storage. File-based storage is not convenient or efficient for many users. This project will generalize the interface to support other types of backends.
This project has several goals:
The text was updated successfully, but these errors were encountered: