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* v0.8 update - added r-viridis package * r-viridis fix version * 0.8 viridis, plots CB friendly update * rapidv0.8_build_1 * Added pin to bowtie2 (v2.3.0) because of the issue: BenLangmead/bowtie2#230 * Creating v1.0
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| #!/bin/bash | ||
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| BIN=$PREFIX/bin | ||
| mkdir -p $BIN | ||
| cp bin/* $BIN/ | ||
| rapid=$PREFIX/bin | ||
| chmod 755 $rapid/* |
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| {% set version = "1.0" %} | ||
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| package: | ||
| name: rapid | ||
| version: {{ version }} | ||
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| source: | ||
| url: https://github.com/SchulzLab/RAPID/archive/v{{ version }}.tar.gz | ||
| sha256: 1de2f22b0e0b312e3882e03b043b73a8abd7bfa51b83604422d624f5ce397308 | ||
| build: | ||
| number: 0 | ||
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| requirements: | ||
| host: | ||
| - r-base | ||
| - r-gplots | ||
| - r-ggplot2 | ||
| - r-rcolorbrewer | ||
| - r-scales | ||
| - r-knitr | ||
| - r-rmarkdown | ||
| - r-reshape2 | ||
| - r-viridis | ||
| - bioconductor-deseq2 | ||
| - bowtie2 ==2.3.0 | ||
| - bedtools ==2.23.0 | ||
| - samtools | ||
| - pandoc | ||
| run: | ||
| - r-base | ||
| - r-gplots | ||
| - r-ggplot2 | ||
| - r-rcolorbrewer | ||
| - r-scales | ||
| - r-knitr | ||
| - r-rmarkdown | ||
| - r-reshape2 | ||
| - r-viridis | ||
| - bioconductor-deseq2 | ||
| - bowtie2 ==2.3.0 | ||
| - bedtools ==2.23.0 | ||
| - samtools | ||
| - pandoc | ||
| test: | ||
| commands: | ||
| - rapidStats.sh --help | ||
| about: | ||
| home: https://github.com/SchulzLab/RAPID | ||
| license: GPL2 | ||
| summary: "Read Alignment, Analysis, and Differential Pipeline (RAPID) is a set of tools for the alignment, and analysis of genomic regions with small RNA clusters derived from small RNA sequencing data." |