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Rebuild BWA 0.7.3a for GCC7 (#13617)
* Add makefile patch for BWA 0.7.3a * Fix patch * Try one more time to get working patch * Add dummy commit
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Original file line number | Diff line number | Diff line change |
---|---|---|
@@ -0,0 +1,13 @@ | ||
diff --git a/Makefile b/Makefile | ||
index b660557..8891160 100644 | ||
--- a/Makefile | ||
+++ b/Makefile | ||
@@ -1,7 +1,6 @@ | ||
-CC= gcc | ||
CFLAGS= -g -Wall -O2 | ||
AR= ar | ||
-DFLAGS= -DHAVE_PTHREAD | ||
+DFLAGS= -DHAVE_PTHREAD $(LDFLAGS) | ||
LOBJS= utils.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o | ||
AOBJS= QSufSort.o bwt_gen.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o \ | ||
is.o bwtindex.o bwape.o kopen.o pemerge.o \ |
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