Updates

build-fail-blacklist

@@ -947,28 +947,24 @@ recipes/bioconductor-ampliqueso
 recipes/bioconductor-icheck
 
 # Compilation errors (and dependencies)
-# recipes/bioconductor-bgmix
+recipes/bioconductor-bgmix
 # recipes/bioconductor-singlecelltk
 # recipes/bioconductor-philr
-# recipes/bioconductor-chemmineob
-# recipes/bioconductor-flipflop
-# recipes/bioconductor-hilbertvisgui
-# recipes/bioconductor-rsbml
+recipes/bioconductor-chemmineob
+recipes/bioconductor-flipflop
+recipes/bioconductor-hilbertvisgui
+recipes/bioconductor-rsbml
 # recipes/bioconductor-universalmotif
-# recipes/bioconductor-linc
-# recipes/bioconductor-bgx
-# recipes/bioconductor-iclusterplus
-# recipes/bioconductor-explorase
-# recipes/bioconductor-lymphoseq
-# recipes/bioconductor-biggr
-# recipes/bioconductor-ibmq
+recipes/bioconductor-bgx
+recipes/bioconductor-iclusterplus
+recipes/bioconductor-explorase
 # recipes/bioconductor-sictools
-# recipes/bioconductor-dsimer
-# recipes/bioconductor-interactivedisplay
-# recipes/bioconductor-post
-# recipes/bioconductor-glad
-# recipes/bioconductor-italics
-# recipes/bioconductor-snapcgh
-# recipes/bioconductor-adacgh2
-# recipes/bioconductor-manor
-# recipes/bioconductor-seqcna
+recipes/bioconductor-dsimer
+recipes/bioconductor-interactivedisplay
+recipes/bioconductor-glad
+recipes/bioconductor-manor
+recipes/bioconductor-seqcna
+recipes/bioconductor-adacgh2
+recipes/bioconductor-snapcgh
+recipes/bioconductor-italics
+recipes/bioconductor-biggr

recipes/bioconductor-philr/meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "1.8.0" %}
+{% set version = "1.8.1" %}
 {% set name = "philr" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c0d3c03a1218b6f60c44667211f4ea63
+  md5: bd10f494d79b06f27cdca4388feafbb5
 build:
   number: 0
   rpaths:
@@ -46,5 +46,5 @@ extra:
   parent_recipe:
     name: bioconductor-philr
     path: recipes/bioconductor-philr
-    version: 1.6.0
+    version: 1.8.0
 

recipes/bioconductor-sictools/build.sh

@@ -8,4 +8,6 @@ CXX=$CXX
 CXX98=$CXX
 CXX11=$CXX
 CXX14=$CXX" > ~/.R/Makevars
-$R CMD INSTALL --build .
+export C_INCLUDE_PATH=${PATH}/include
+export LIBRARY_PATH=${PATH}/lib
+$R CMD INSTALL --build .

recipes/bioconductor-universalmotif/meta.yaml

@@ -1,4 +1,4 @@
-{% set version = "1.0.0" %}
+{% set version = "1.0.12" %}
 {% set name = "universalmotif" %}
 {% set bioc = "3.8" %}
 
@@ -10,7 +10,7 @@ source:
     - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
     - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
     - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
-  md5: c71cb837cc9811cfc1d9540b042e920e
+  md5: 8d36f424357b4375e4cd623bd7c6cf4e
 build:
   number: 0
   rpaths:
@@ -53,4 +53,9 @@ about:
   home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
   license: GPL-3
   summary: 'Allows for importing most common motif types into R for use by functions provided by other Bioconductor motif-related packages. Motifs can be exported into most major motif formats from various classes as defined by other Bioconductor packages. A suite of motif and sequence manipulation and analysis functions are included, including enrichment, comparison, P-value calculation, shuffling, trimming, higher-order motifs, and others.'
+extra:
+  parent_recipe:
+    name: bioconductor-universalmotif
+    path: recipes/bioconductor-universalmotif
+    version: 1.0.0