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Add makefile patch, bump BWA. #13594

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Feb 13, 2019
Merged

Add makefile patch, bump BWA. #13594

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39bd94c
Add makefile patch
kyleabeauchamp Feb 11, 2019
aa38916
Try bigger patch
kyleabeauchamp Feb 12, 2019
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16 changes: 16 additions & 0 deletions recipes/bwa/Makefile.patch
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Original file line number Diff line number Diff line change
@@ -0,0 +1,16 @@
diff --git a/Makefile b/Makefile
index 7151435..2f0a4fe 100644
--- a/Makefile
+++ b/Makefile
@@ -1,9 +1,9 @@
-CC= gcc
+#CC= gcc
#CC= clang --analyze
CFLAGS= -g -Wall -Wno-unused-function -O2
WRAP_MALLOC=-DUSE_MALLOC_WRAPPERS
AR= ar
-DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC)
+DFLAGS= -DHAVE_PTHREAD $(WRAP_MALLOC) $(LDFLAGS)
LOBJS= utils.o kthread.o kstring.o ksw.o bwt.o bntseq.o bwa.o bwamem.o bwamem_pair.o bwamem_extra.o malloc_wrap.o \
QSufSort.o bwt_gen.o rope.o rle.o is.o bwtindex.o
AOBJS= bwashm.o bwase.o bwaseqio.o bwtgap.o bwtaln.o bamlite.o \
4 changes: 3 additions & 1 deletion recipes/bwa/meta.yaml
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Expand Up @@ -8,9 +8,11 @@ package:
source:
url: https://github.com/lh3/bwa/archive/v{{ version }}.tar.gz
sha256: {{ sha256 }}
patches:
- Makefile.patch

build:
number: 4
number: 5

requirements:
build:
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