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more from #15196 #15326

Merged
merged 9 commits into from
May 13, 2019
Merged

more from #15196 #15326

merged 9 commits into from
May 13, 2019

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dpryan79
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@dpryan79 dpryan79 commented May 12, 2019 •
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ℹ️
If this is your first pull request to Bioconda please ping @bioconda/core so it can be reviewed and to request being added as a member of the Bioconda team. Members of the Bioconda team are able to merge their own pull requests once tests and linting have passed.

  • I have read the guidelines for bioconda recipes.
  • This PR adds a new recipe.
  • AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
  • This PR updates an existing recipe.
  • This PR does something else (explain below).

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biocondabot bot commented May 12, 2019 •
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Package(s) built on CircleCI are ready for inspection:

Arch Package Repodata
linux-64 bcftools-1.3.1-h84994c4_5.tar.bz2 repodata.json
linux-64 bcftools-1.9-ha228f0b_4.tar.bz2 repodata.json
linux-64 bedtools-2.22-hdbcaa40_3.tar.bz2 repodata.json
linux-64 bedtools-2.23.0-hdbcaa40_3.tar.bz2 repodata.json
linux-64 bowtie2-2.2.1-py27h6bb024c_2.tar.bz2 repodata.json
linux-64 bowtie2-2.2.1-py36h6bb024c_2.tar.bz2 repodata.json
linux-64 bowtie2-2.2.1-py37h6bb024c_2.tar.bz2 repodata.json
linux-64 bowtie2-2.2.4-py27h6bb024c_4.tar.bz2 repodata.json
linux-64 bowtie2-2.2.4-py36h6bb024c_4.tar.bz2 repodata.json
linux-64 bowtie2-2.2.4-py37h6bb024c_4.tar.bz2 repodata.json
linux-64 bowtie2-2.2.5-py27h6bb024c_5.tar.bz2 repodata.json
linux-64 bowtie2-2.2.5-py36h6bb024c_5.tar.bz2 repodata.json
linux-64 bowtie2-2.2.5-py37h6bb024c_5.tar.bz2 repodata.json
linux-64 braker-1.9-3.tar.bz2 repodata.json
osx-64 bcftools-1.3.1-ha441bb4_5.tar.bz2 repodata.json
osx-64 bcftools-1.9-h3a161e8_4.tar.bz2 repodata.json

You may alsu use conda to install these:

  • For packages in linux-64: 
    conda install -c https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
  • For packages in osx-64: 
    conda install -c https://56945-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag Install with docker
bcftools 1.3.1--h84994c4_5
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bcftools%3A1.3.1--h84994c4_5.tar.gz" | gzip -dc | docker load
bcftools 1.9--ha228f0b_4
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bcftools%3A1.9--ha228f0b_4.tar.gz" | gzip -dc | docker load
bedtools 2.22--hdbcaa40_3
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bedtools%3A2.22--hdbcaa40_3.tar.gz" | gzip -dc | docker load
bedtools 2.23.0--hdbcaa40_3
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bedtools%3A2.23.0--hdbcaa40_3.tar.gz" | gzip -dc | docker load
bowtie2 2.2.1--py27h6bb024c_2
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bowtie2%3A2.2.1--py27h6bb024c_2.tar.gz" | gzip -dc | docker load
bowtie2 2.2.1--py36h6bb024c_2
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bowtie2%3A2.2.1--py36h6bb024c_2.tar.gz" | gzip -dc | docker load
bowtie2 2.2.1--py37h6bb024c_2
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bowtie2%3A2.2.1--py37h6bb024c_2.tar.gz" | gzip -dc | docker load
bowtie2 2.2.4--py27h6bb024c_4
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bowtie2%3A2.2.4--py27h6bb024c_4.tar.gz" | gzip -dc | docker load
bowtie2 2.2.4--py36h6bb024c_4
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bowtie2%3A2.2.4--py36h6bb024c_4.tar.gz" | gzip -dc | docker load
bowtie2 2.2.4--py37h6bb024c_4
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bowtie2%3A2.2.4--py37h6bb024c_4.tar.gz" | gzip -dc | docker load
bowtie2 2.2.5--py27h6bb024c_5
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bowtie2%3A2.2.5--py27h6bb024c_5.tar.gz" | gzip -dc | docker load
bowtie2 2.2.5--py36h6bb024c_5
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bowtie2%3A2.2.5--py36h6bb024c_5.tar.gz" | gzip -dc | docker load
bowtie2 2.2.5--py37h6bb024c_5
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/bowtie2%3A2.2.5--py37h6bb024c_5.tar.gz" | gzip -dc | docker load
braker 1.9--3
showcurl "https://56919-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/braker%3A1.9--3.tar.gz" | gzip -dc | docker load

@dpryan79 dpryan79 merged commit 16b0b30 into master May 13, 2019
@dpryan79 dpryan79 deleted the fix15196_3 branch May 13, 2019 18:34
kpalin pushed a commit to kpalin/bioconda-recipes that referenced this pull request Aug 7, 2019
@dpryan79 @kpalin
more from bioconda#15196 (bioconda#15326)
2f97adb 
* more from bioconda#15196

* bump build numbers

* updates

* updates

* old bedtools versions won't build, fix bcftools/1.3.1

* group blacklist items a bit

* Try to fix braker and bowtie2

* a few updates

* Update meta.yaml
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