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Add perl-ensembl-core #18808

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merged 5 commits into from Dec 6, 2019
Merged

Add perl-ensembl-core #18808

merged 5 commits into from Dec 6, 2019

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abretaud
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Bioconda requires reviews prior to merging pull-requests (PRs). To facilitate this, once your PR is passing tests and ready to be merged, please add the please review & merge label so other members of the bioconda community can have a look at your PR and either make suggestions or merge it. Note that if you are not already a member of the bioconda project (meaning that you can't add this label), please ping @bioconda/core so that your PR can be reviewed and merged (please note if you'd like to be added to the bioconda project). Please see #15332 for more details.

  • I have read the guidelines for bioconda recipes.
  • This PR adds a new recipe.
  • AFAIK, this recipe is directly relevant to the biological sciences (otherwise, please submit to the more general purpose conda-forge channel).
  • This PR updates an existing recipe.
  • This PR does something else (explain below).

A new dep for RSAT: perl-ensembl-core
There are no release archives on the github repo + no way to create issues...

@abretaud
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We'll need this dep too: #18392

@vladsavelyev
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Thanks @abretaud for starting this work! It would be so fantastic if you could figure out what's wrong with the BigFile recipe. I feel desperate.

Vlad

@abretaud
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abretaud commented Dec 6, 2019

@BiocondaBot please fetch artifacts

@abretaud
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abretaud commented Dec 6, 2019

@BiocondaBot please add label

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Package(s) built on CircleCI are ready for inspection:

Arch Package Repodata
noarch perl-ensembl-compara-98-0.tar.bz2 repodata.json
noarch perl-ensembl-genomes-44-0.tar.bz2 repodata.json
noarch perl-ensembl-io-98-0.tar.bz2 repodata.json
noarch perl-ensembl-variation-98-0.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on noarch:
conda install -c https://85913-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
conda install -c https://85913-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
conda install -c https://85913-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>
conda install -c https://85913-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag Install with docker
perl-ensembl-compara 98--0
showcurl "https://85913-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/perl-ensembl-compara%3A98--0.tar.gz" | gzip -dc | docker load
perl-ensembl-genomes 44--0
showcurl "https://85913-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/perl-ensembl-genomes%3A44--0.tar.gz" | gzip -dc | docker load
perl-ensembl-io 98--0
showcurl "https://85913-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/perl-ensembl-io%3A98--0.tar.gz" | gzip -dc | docker load
perl-ensembl-variation 98--0
showcurl "https://85913-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/perl-ensembl-variation%3A98--0.tar.gz" | gzip -dc | docker load

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Dec 6, 2019
@dpryan79
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dpryan79 commented Dec 6, 2019

@BiocondaBot please merge

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I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

@BiocondaBot BiocondaBot merged commit ee89a2a into bioconda:master Dec 6, 2019
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4 participants