Ltr retriever

recipes/ltr_retriever/build.sh

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+#!/bin/sh
+set -x -e
+
+LTRR_DIR=${PREFIX}/share/LTR_retriever
+
+mkdir -p ${PREFIX}/bin
+mkdir -p ${LTRR_DIR}
+cp -r * ${LTRR_DIR}
+
+# -----------------
+# Deal with main scripts "LTR_retriever LAI"
+cat <<END >>${PREFIX}/bin/LTR_retriever
+#!/bin/bash
+NAME=\$(basename \$0)
+perl ${LTRR_DIR}/\${NAME} \$@
+END
+
+chmod a+x ${PREFIX}/bin/LTR_retriever
+ln -s ${PREFIX}/bin/LTR_retriever ${PREFIX}/bin/LAI
+
+# -----------------
+# Deal with bin scripts "convert_ltr_struc.pl convert_MGEScan3.0.pl convert_ltrdetector.pl"
+cat <<END >>${PREFIX}/bin/convert_ltr_struc.pl
+#!/bin/bash
+NAME=\$(basename \$0)
+perl ${LTRR_DIR}/bin/\${NAME} \$@
+END
+
+chmod a+x ${PREFIX}/bin/convert_ltr_struc.pl
+ln -s ${PREFIX}/bin/convert_ltr_struc.pl ${PREFIX}/bin/convert_MGEScan3.0.pl
+ln -s ${PREFIX}/bin/convert_ltr_struc.pl ${PREFIX}/bin/convert_ltrdetector.pl

recipes/ltr_retriever/meta.yaml

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+{% set name = "LTR_retriever" %}
+{% set version = "2.8" %}
+{% set sha256 = "4e10c4df03cd84a841f90a0ac636a04863279b85ad6cfc155905e7ac29d46a8b" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/oushujun/LTR_retriever/archive/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 0
+  noarch: generic
+
+requirements:
+  run:
+    - perl
+    - perl-text-soundex
+    - cd-hit
+    - repeatmasker
+
+test:
+  commands:
+    - LTR_retriever -h 2>&1 | grep -i usage
+
+about:
+  home: https://github.com/oushujun/LTR_retriever
+  license: GPLv3
+  license_family: GPL
+  license_file: LICENSE
+  summary: Identification of LTR retrotransposons
+  dev_url: https://github.com/oushujun/LTR_retriever