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Add r-txrevise #20481

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62 changes: 62 additions & 0 deletions recipes/r-txrevise/meta.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,62 @@
{% set name = 'txrevise' %}
{% set version = '0.1' %}
{% set hash = '6a0c987ed66399ed4332e6eb5a4fc22d91daadca3435e908366952b5e9d53609' %}

package:
name: r-{{ name|lower }}
version: {{ version }}

source:
url: https://github.com/kauralasoo/txrevise/archive/v{{ version }}.tar.gz
sha256: {{ hash }}

build:
number: 0
noarch: generic
script: R CMD INSTALL --build .
rpaths:
- lib/R/lib/
- lib/

requirements:
host:
- bioconductor-iranges
- bioconductor-genomicfeatures
- bioconductor-genomicranges
- r-base >=3.3
- r-dplyr
- r-purrr
- r-purrrlyr
- r-ggplot2
- r-readr
- r-tidyr
run:
- bioconductor-iranges
- bioconductor-genomicfeatures
- bioconductor-genomicranges
- r-base >=3.3
- r-dplyr
- r-purrr
- r-purrrlyr
- r-ggplot2
- r-readr
- r-tidyr

test:
commands:
- '$R -e "library(''txrevise'')"'

about:
home: https://github.com/kauralasoo/txrevise
license: Apache 2.0
license_family: Apache
summary: Construct custom transcript annotations for Salmon and kallisto
description: |
txrevise R package provides utilites to pre-process Ensembl transcript annotations to
quantify differences in transcript strucuture (alternative promoters, alternative
splicing, alternative poly-adenylation) either between experimental conditions or
genotypes (e.g. for transcript usage quntitative trait loci (tuQTL) mapping).
maintainers: raivivek
extra:
identifiers:
- doi:10.7554/eLife.41673