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Update poppunk to 2.1.1 #23350

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merged 20 commits into from
Aug 3, 2020
Merged

Update poppunk to 2.1.1 #23350

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e01556c
Update poppunk to 2.1.1
BiocondaBot Jul 24, 2020
826ea81
Update dependencies
johnlees Jul 24, 2020
4acaa3d
Try with full matplotlib
johnlees Jul 24, 2020
faa586a
skip matplotlib lint
johnlees Jul 24, 2020
7377b5a
Fix indent error
johnlees Jul 24, 2020
972fd14
Fix tab error
johnlees Jul 24, 2020
b577b1a
Revert matplotlib changes
johnlees Jul 24, 2020
6534c09
Try adding X11 to run
johnlees Jul 27, 2020
1430d5a
Add libXi
johnlees Jul 27, 2020
06ecdda
Add libXcursor
johnlees Jul 27, 2020
47dfcad
Add libXdamage
johnlees Jul 27, 2020
49b6213
Correct libXdamage
johnlees Jul 27, 2020
172ec17
Actually correct libXdamage
johnlees Jul 27, 2020
09c6bcd
Add libXcomposite
johnlees Jul 27, 2020
ef5aaa4
Add libXrandr
johnlees Jul 27, 2020
353f555
Add libxinerama
johnlees Jul 27, 2020
33c2202
Add networkx dependency back
johnlees Jul 27, 2020
66608aa
Try with X11 in yum_requirements.txt
johnlees Jul 31, 2020
3efa8b0
poppunk: use test/requires and extended-base for gtk3 sys deps
mbargull Aug 3, 2020
39bc5c7
poppunk: move xorg-* deps back to requirements/run
mbargull Aug 3, 2020
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29 changes: 19 additions & 10 deletions recipes/poppunk/meta.yaml
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
{% set version = "2.0.2" %}
{% set version = "2.1.1" %}
{% set name = "PopPUNK" %}

package:
Expand All @@ -7,7 +7,7 @@ package:

source:
url: https://pypi.io/packages/source/p/{{ name|lower }}/{{ name|lower }}-{{ version }}.tar.gz
sha256: ad15a65ca88bef632e9caf017d63e3962787b5c8e1ae68dfa9da3976eb420c2e
sha256: 260d22f678fd5460231673baeeb6e3b3c62232114c3ac77a046949e2b95ff986

build:
number: 0
Expand All @@ -21,24 +21,33 @@ build:

requirements:
host:
- python >=3
- python >=3.8
- pip

run:
- python >=3
- python >=3.8
- numpy
- scipy
- scikit-learn
- dendropy
- sharedmem
- numba
- pandas
- networkx >=2.1
- graph-tool
- networkx
- matplotlib-base
- hdbscan
- mash >=2.0
- pp-sketchlib >=1.3
- pp-sketchlib >=1.4
- rapidnj
# The xorg-* requirements are only used for gtk3 which is pulled in via graph-tool.
- xorg-libxi
- xorg-libxcursor
- xorg-libxdamage
- xorg-libxcomposite
- xorg-libxrandr
- xorg-libxinerama
- xorg-libxpm
- xorg-libxaw
- xorg-libxfixes

test:
imports:
Expand All @@ -57,5 +66,5 @@ about:
summary: 'PopPUNK (POPulation Partitioning Using Nucleotide Kmers)'

extra:
identifiers:
- doi:10.1101/gr.241455.118
identifiers:
- doi:10.1101/gr.241455.118