Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add CliqueSNV #24946

Merged
merged 3 commits into from Oct 20, 2020
Merged

Add CliqueSNV #24946

merged 3 commits into from Oct 20, 2020

Conversation

tomkinsc
Copy link
Member

@tomkinsc tomkinsc commented Oct 20, 2020

This adds a package for CliqueSNV, a tool for reconstruction of Intra-Host Viral Populations from NGS Reads.


Please use the following BiocondaBot commands:

Everyone has access to the following BiocondaBot commands, which can be given in a comment:

@BiocondaBot please update Merge the master branch into a PR.
@BiocondaBot please add label Add the please review & merge label.
@BiocondaBot please fetch artifacts Post links to CI-built packages/containers.
You can use this to test packages locally.

For members of the Bioconda project, the following command is also available:

@BiocondaBot please merge Upload built packages/containers and merge a PR.
Someone must approve a PR first!
This reduces CI build time by reusing built artifacts.

Also, the bot watches for comments from non-members that include @bioconda/<team> and will automatically re-post them to notify the addressed <team>.

@tomkinsc
Copy link
Member Author

@BiocondaBot please fetch artifacts

@BiocondaBot
Copy link
Collaborator

Package(s) built on CircleCI are ready for inspection:

Arch Package Repodata
noarch cliquesnv-1.5.5-0.tar.bz2 repodata.json

You may also use conda to install these:

  • For packages on noarch:
conda install -c https://127979-42372094-gh.circle-artifacts.com/0/tmp/artifacts/packages <package name>

Docker image(s) built:

Package Tag Install with docker
cliquesnv 1.5.5--0
showcurl "https://127979-42372094-gh.circle-artifacts.com/0/tmp/artifacts/images/cliquesnv%3A1.5.5--0.tar.gz" | gzip -dc | docker load

@tomkinsc
Copy link
Member Author

@BiocondaBot please add label

@BiocondaBot BiocondaBot added the please review & merge set to ask for merge label Oct 20, 2020
@dpryan79
Copy link
Contributor

@bioconda-bot please merge

@BiocondaBot
Copy link
Collaborator

I will attempt to upload artifacts and merge this PR. This may take some time, please have patience.

@BiocondaBot BiocondaBot merged commit 503932b into master Oct 20, 2020
@BiocondaBot BiocondaBot deleted the ct-add-cliquesnv branch October 20, 2020 19:40
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
please review & merge set to ask for merge
Projects
None yet
Development

Successfully merging this pull request may close these issues.

None yet

3 participants