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Update mosdepth recipe #48070

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Update mosdepth recipe #48070

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cde674d
update link
ramprasadn May 24, 2024
663bc7d
Update build.sh
ramprasadn May 24, 2024
b68b048
Update meta.yaml
ramprasadn May 25, 2024
98fed21
Merge branch 'master' into update-mosdepth
mencian Jun 6, 2024
bee617b
Manually add $PREFIX/include to CFLAGS
martin-g Jun 7, 2024
4286307
Try with "--passC:"
martin-g Jun 7, 2024
6125f2d
Also pass `-L$PREFIX/lib` to `--passC:`
martin-g Jun 7, 2024
baffd71
Wrap the C flags in single quotes
martin-g Jun 7, 2024
908eaaa
Pass compiler and linker flags to both `nim install` and `nim build`
martin-g Jun 7, 2024
ed5845f
try adding d4binding to run
mencian Jun 10, 2024
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7 changes: 5 additions & 2 deletions recipes/mosdepth/build.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -9,10 +9,13 @@ if [[ ${target_platform} == osx-64 ]] ; then
curl -SL https://github.com/brentp/mosdepth/archive/refs/tags/v${PKG_VERSION}.tar.gz -o mosdepth-latest.tar.gz
tar -xzf mosdepth-latest.tar.gz
cd mosdepth-${PKG_VERSION}
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export CFLAGS="$CFLAGS -I$PREFIX/include"
export LDFLAGS="$LDFLAGS -L$PREFIX/lib"
nimble install -y "docopt@0.7.0"
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nimble build -y --verbose -d:release
nimble build -y --verbose -d:release -d:d4 --passC:"'-I$PREFIX/include -L$PREFIX/lib'"
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else
curl -SL https://github.com/brentp/mosdepth/releases/download/v$PKG_VERSION/mosdepth -o mosdepth
#Link to mosdepth_d4 is specified below because of https://github.com/brentp/mosdepth/issues/232
curl -SL https://github.com/brentp/mosdepth/releases/download/v$PKG_VERSION/mosdepth_d4 -o mosdepth
chmod +x mosdepth
fi

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3 changes: 2 additions & 1 deletion recipes/mosdepth/meta.yaml
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Expand Up @@ -5,7 +5,7 @@ package:
version: {{ version }}

build:
number: 0
number: 1
run_exports:
- {{ pin_subpackage("mosdepth", max_pin="x.x") }}

Expand All @@ -15,6 +15,7 @@ requirements:
- curl
host:
- htslib >=1.19.1
- d4binding
run:

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test:
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