1567 Bioconductor sotware binaries built
3385 Other dependency binaries built
99 failed packages
511 unclaimed packages
Package | Status | BBS Status | Log | Known Error |
---|---|---|---|---|
DeepBlueR | Failed | ERROR | Build Log | Error unknown |
cytoviewer | Failed | OK | Build Log | Failed R dependency: 'archive' |
memes | Failed | OK | Build Log | Failed R dependency: 'ggseqlogo'. CRAN Package 'ggseqlogo' archived. Extracted text: Archived on 2023-11-27 as email to the maintainer was undeliverable. |
scanMiR | Failed | OK | Build Log | Failed R dependency: 'ggseqlogo'. CRAN Package 'ggseqlogo' archived. Extracted text: Archived on 2023-11-27 as email to the maintainer was undeliverable. |
seqArchR | Failed | OK | Build Log | Failed R dependency: 'ggseqlogo'. CRAN Package 'ggseqlogo' archived. Extracted text: Archived on 2023-11-27 as email to the maintainer was undeliverable. |
transite | Failed | OK | Build Log | Failed R dependency: 'ggseqlogo'. CRAN Package 'ggseqlogo' archived. Extracted text: Archived on 2023-11-27 as email to the maintainer was undeliverable. |
PharmacoGx | Failed | OK | Build Log | Failed R dependency: 'magicaxis'. CRAN Package 'magicaxis' archived. Extracted text: Archived on 2023-11-28 as issues were not corrected in time. |
RadioGx | Failed | OK | Build Log | Failed R dependency: 'magicaxis'. CRAN Package 'magicaxis' archived. Extracted text: Archived on 2023-11-28 as issues were not corrected in time. |
AlphaBeta | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
ANCOMBC | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
BaalChIP | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
bioCancer | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
cellmigRation | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
CNORfuzzy | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
compSPOT | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
COTAN | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
CytoGLMM | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
DAPAR | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
DESpace | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
destiny | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
Doscheda | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
doseR | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
epidecodeR | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
flowDensity | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
flowPloidy | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
FlowSOM | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
frenchFISH | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
FuseSOM | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
gDRutils | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
GeneGeneInteR | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
GenomicSuperSignature | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
GEOexplorer | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
GeomxTools | Failed | ERROR | Build Log | Failed R dependency: 'nloptr' |
GEWIST | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
glmSparseNet | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
GRmetrics | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
GWASTools | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
hipathia | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
InTAD | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
InterCellar | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
iPath | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
ISLET | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
ivygapSE | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
LinkHD | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
Maaslin2 | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
MBECS | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
MEDME | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
metabomxtr | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
microbiomeExplorer | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
MICSQTL | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
midasHLA | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
monocle | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
MQmetrics | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
MSPrep | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
msqrob2 | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
MSstats | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
MultiRNAflow | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
MWASTools | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
nondetects | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
NormalyzerDE | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
omicsViewer | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
OncoSimulR | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
OpenStats | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
orthogene | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
orthos | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
padma | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
PAIRADISE | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
pareg | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
PhenStat | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
PhosR | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
plotGrouper | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
pmm | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
protGear | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
ptairMS | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
pvca | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
qmtools | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
ramr | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
RAREsim | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
rexposome | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
rifi | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
RNAseqCovarImpute | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
rqt | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
RTCGA | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
RTN | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
scDD | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
SeqVarTools | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
SIAMCAT | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
snm | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
Summix | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
survtype | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
synergyfinder | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
TADCompare | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
TargetDecoy | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
TSAR | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
variancePartition | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
waddR | Failed | OK | Build Log | Failed R dependency: 'nloptr' |
cliqueMS | Failed | OK | Build Log | Failed R dependency: 'qlcMatrix'. CRAN Package 'qlcMatrix' archived. Extracted text: Archived on 2023-11-29 as issues were not corrected in time. |
SeqSQC | Failed | ERROR | Build Log | Failed R dependency: 'rbokeh'. CRAN Package 'rbokeh' archived. Extracted text: Archived on 2023-10-29 as check problems were not corrected in time. |
RedisParam | Failed | OK | Build Log | Failed R dependency: 'redux' |
Package | Status | Blocked By |
---|---|---|
ADAM | Unclaimed | |
ADAMgui | Unclaimed | Incomplete Bioc dependencies: ADAM. |
AgiMicroRna | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, ReportingTools, VariantAnnotation, affycoretools, biovizBase, ensembldb, ggbio, oligoClasses. |
AHMassBank | Unclaimed | Incomplete Bioc dependencies: AnnotationHubData, GenomicFeatures, OrganismDbi. |
alabaster | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, alabaster.vcf. |
alabaster.vcf | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
AllelicImbalance | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
AMARETTO | Unclaimed | |
annmap | Unclaimed | |
APAlyzer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
APL | Unclaimed | |
appreci8R | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicScores, OrganismDbi, VariantAnnotation. |
ArrayExpress | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
arrayMvout | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, lumi, methylumi, minfi. |
arrayQualityMetrics | Unclaimed | Incomplete Bioc dependencies: beadarray. |
artMS | Unclaimed | Incomplete Bioc dependencies: MSstats. |
ASpli | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
ATACCoGAPS | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, CoGAPS, GenomicFeatures, OrganismDbi, TFBSTools, chromVAR, motifmatchr, rGREAT. |
ATACseqQC | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, ChIPpeakAnno, GenomicFeatures, GenomicScores, TFBSTools, ensembldb, motifStack, regioneR. |
ATACseqTFEA | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, TFBSTools, motifmatchr. |
atena | Unclaimed | |
atSNP | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, TFBSTools, motifStack. |
AUCell | Unclaimed | |
BadRegionFinder | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
ballgown | Unclaimed | |
bambu | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures. |
bandle | Unclaimed | Incomplete Bioc dependencies: MLInterfaces, pRoloc. |
Basic4Cseq | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
BBCAnalyzer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
beadarray | Unclaimed | |
BEAT | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
benchdamic | Unclaimed | Incomplete Bioc dependencies: ANCOMBC, Maaslin2, zinbwave. |
BgeeCall | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
bigmelon | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, lumi, methylumi, minfi, wateRmelon. |
BindingSiteFinder | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
BiocOncoTK | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
biomvRCNS | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
BioNERO | Unclaimed | |
biscuiteer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, annotatr, bsseq, bumphunter, dmrseq, regioneR. |
BiSeq | Unclaimed | |
blacksheepr | Unclaimed | Incomplete Bioc dependencies: DEXSeq. |
blima | Unclaimed | Incomplete Bioc dependencies: beadarray. |
BloodGen3Module | Unclaimed | |
bnbc | Unclaimed | |
BOBaFIT | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, biovizBase, ensembldb, ggbio. |
brainflowprobes | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, OrganismDbi, VariantAnnotation, biovizBase, bumphunter, derfinder, derfinderPlot, ensembldb, ggbio. |
branchpointer | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
BSgenome | Unclaimed | |
BSgenomeForge | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
bsseq | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
BubbleTree | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, biovizBase, ensembldb. |
BUSpaRse | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, ensembldb. |
CAFE | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, biovizBase, ensembldb, ggbio. |
cageminer | Unclaimed | Incomplete Bioc dependencies: BSgenome, BioNERO, GenomicFeatures, OrganismDbi, VariantAnnotation, biovizBase, ensembldb, ggbio. |
cardelino | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
casper | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
CATALYST | Unclaimed | Incomplete Bioc dependencies: FlowSOM. |
cbaf | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, RTCGAToolbox, TCGAutils, cBioPortalData. |
CBEA | Unclaimed | |
cBioPortalData | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, RTCGAToolbox, TCGAutils. |
ccmap | Unclaimed | |
censcyt | Unclaimed | Incomplete Bioc dependencies: FlowSOM, diffcyt. |
Cepo | Unclaimed | |
CeTF | Unclaimed | |
CexoR | Unclaimed | Incomplete Bioc dependencies: BSgenome, genomation. |
cfDNAPro | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
cfTools | Unclaimed | |
ChAMP | Unclaimed | Incomplete Bioc dependencies: BSgenome, DMRcate, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, bsseq, bumphunter, ensembldb, goseq, lumi, methylumi, minfi, missMethyl, wateRmelon. |
chimeraviz | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
ChIPanalyser | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
ChIPComp | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
chipenrich | Unclaimed | |
ChIPexoQual | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, biovizBase, ensembldb. |
ChIPQC | Unclaimed | Incomplete Bioc dependencies: BSgenome, DiffBind, GenomicFeatures, GreyListChIP. |
ChIPseeker | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
ChIPXpress | Unclaimed | Incomplete Bioc dependencies: frma, oligo, oligoClasses. |
ChromHeatMap | Unclaimed | |
chromPlot | Unclaimed | |
cicero | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb, monocle. |
CINdex | Unclaimed | |
circRNAprofiler | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, gwascat. |
CircSeqAlignTk | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, Rhisat2, SGSeq. |
ClassifyR | Unclaimed | |
cleanUpdTSeq | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
clipper | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, qpgraph. |
cliProfiler | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
cn.farms | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
CNEr | Unclaimed | |
CNVfilteR | Unclaimed | Incomplete Bioc dependencies: BSgenome, CopyNumberPlots, GenomicFeatures, VariantAnnotation, biovizBase, ensembldb, karyoploteR, regioneR. |
CNViz | Unclaimed | Incomplete Bioc dependencies: BSgenome, CopyNumberPlots, GenomicFeatures, VariantAnnotation, biovizBase, ensembldb, karyoploteR, regioneR. |
CNVrd2 | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
COCOA | Unclaimed | Incomplete Bioc dependencies: BSgenome, MIRA, bsseq. |
CODEX | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
CoGAPS | Unclaimed | |
Cogito | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
comapr | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
coMET | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
coMethDMR | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter. |
compEpiTools | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb, methylPipe. |
consensusDE | Unclaimed | Incomplete Bioc dependencies: EDASeq, GenomicFeatures, RUVSeq, ensembldb. |
consensusOV | Unclaimed | Incomplete Bioc dependencies: GSVA. |
consICA | Unclaimed | |
contiBAIT | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, VariantAnnotation. |
conumee | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi. |
CopyNumberPlots | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, biovizBase, ensembldb, karyoploteR, regioneR. |
countsimQC | Unclaimed | |
cpvSNP | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
crisprBowtie | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
crisprBwa | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
crisprDesign | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, crisprBowtie. |
CRISPRseek | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
CrispRVariants | Unclaimed | |
crisprVerse | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, crisprBowtie, crisprDesign, crisprViz, ensembldb. |
crisprViz | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, crisprBowtie, crisprDesign, ensembldb. |
crlmm | Unclaimed | Incomplete Bioc dependencies: oligoClasses. |
crossmeta | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
CSSQ | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
cummeRbund | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
customProDB | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
cyanoFilter | Unclaimed | Incomplete Bioc dependencies: flowDensity. |
CyTOFpower | Unclaimed | Incomplete Bioc dependencies: CytoGLMM, FlowSOM, diffcyt. |
cytofQC | Unclaimed | Incomplete Bioc dependencies: CATALYST, FlowSOM. |
dagLogo | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, TFBSTools, motifStack. |
DAMEfinder | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, bumphunter. |
DaMiRseq | Unclaimed | Incomplete Bioc dependencies: EDASeq, GenomicFeatures. |
ddPCRclust | Unclaimed | Incomplete Bioc dependencies: flowDensity. |
debrowser | Unclaimed | |
decompTumor2Sig | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
deconvR | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi. |
deepSNV | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
DegNorm | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
demuxSNP | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, ensembldb. |
derfinderPlot | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, OrganismDbi, VariantAnnotation, biovizBase, bumphunter, derfinder, ensembldb, ggbio. |
DEScan2 | Unclaimed | Incomplete Bioc dependencies: BSgenome, ChIPpeakAnno, GenomicFeatures, ensembldb, regioneR. |
DEXSeq | Unclaimed | |
DiffBind | Unclaimed | Incomplete Bioc dependencies: BSgenome, GreyListChIP. |
diffcoexp | Unclaimed | |
diffcyt | Unclaimed | Incomplete Bioc dependencies: FlowSOM. |
diffHic | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
diffUTR | Unclaimed | Incomplete Bioc dependencies: DEXSeq, GenomicFeatures, ensembldb. |
DMRcate | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, bsseq, bumphunter, ensembldb, methylumi, minfi, missMethyl. |
dmrseq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, annotatr, bsseq, bumphunter, regioneR. |
DNAfusion | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
DominoEffect | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
doppelgangR | Unclaimed | |
doubletrouble | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
dreamlet | Unclaimed | Incomplete Bioc dependencies: EnrichmentBrowser, variancePartition, zenith. |
drugTargetInteractions | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, ensembldb. |
DrugVsDisease | Unclaimed | Incomplete Bioc dependencies: ArrayExpress, oligo, oligoClasses. |
easier | Unclaimed | |
easyRNASeq | Unclaimed | |
edge | Unclaimed | Incomplete Bioc dependencies: snm. |
ELMER | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, TCGAbiolinks, VariantAnnotation, biovizBase, ensembldb. |
enhancerHomologSearch | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, TFBSTools, motifmatchr. |
ENmix | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi. |
EnrichmentBrowser | Unclaimed | |
enrichTF | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, TFBSTools, motifmatchr, pipeFrame. |
ensembldb | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
ensemblVEP | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
epialleleR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
epigenomix | Unclaimed | Incomplete Bioc dependencies: beadarray. |
epigraHMM | Unclaimed | Incomplete Bioc dependencies: BSgenome, GreyListChIP. |
EpiMix | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
epimutacions | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, OrganismDbi, VariantAnnotation, biovizBase, bumphunter, ensembldb, minfi. |
EpiTxDb | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
epivizr | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, OrganismDbi, bumphunter, ensembldb, epivizrData. |
epivizrChart | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, OrganismDbi, ensembldb, epivizrData. |
epivizrData | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, OrganismDbi, ensembldb. |
epivizrStandalone | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, OrganismDbi, bumphunter, ensembldb, epivizr, epivizrData. |
erma | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, OrganismDbi, VariantAnnotation. |
esATAC | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, ChIPseeker, GenomicFeatures, TFBSTools, motifmatchr, pipeFrame. |
escape | Unclaimed | Incomplete Bioc dependencies: GSVA. |
EventPointer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, SGSeq. |
EWCE | Unclaimed | Incomplete Bioc dependencies: orthogene. |
exomePeak2 | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures. |
extraChIPs | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicInteractions, Gviz, VariantAnnotation, biovizBase, ensembldb. |
factR | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
fCCAC | Unclaimed | Incomplete Bioc dependencies: BSgenome, genomation. |
fcScan | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
ffpe | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, lumi, methylumi, minfi. |
FindIT2 | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
FLAMES | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, bambu, biovizBase, ensembldb, ggbio. |
flowCut | Unclaimed | Incomplete Bioc dependencies: flowDensity. |
FRASER | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OUTRIDER. |
funtooNorm | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi. |
GA4GHclient | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
GA4GHshiny | Unclaimed | Incomplete Bioc dependencies: BSgenome, GA4GHclient, GenomicFeatures, VariantAnnotation. |
GARS | Unclaimed | Incomplete Bioc dependencies: DaMiRseq, EDASeq, GenomicFeatures. |
gcapc | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
GDCRNATools | Unclaimed | |
gDNAx | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, VariantAnnotation. |
gDR | Unclaimed | Incomplete Bioc dependencies: PharmacoGx, gDRcore, gDRimport, gDRutils. |
gDRcore | Unclaimed | Incomplete Bioc dependencies: gDRutils. |
gDRimport | Unclaimed | Incomplete Bioc dependencies: PharmacoGx, gDRutils. |
geneAttribution | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
GENESIS | Unclaimed | Incomplete Bioc dependencies: GWASTools, SeqVarTools. |
GeneStructureTools | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
GeneTonic | Unclaimed | |
geneXtendeR | Unclaimed | |
GenomicFeatures | Unclaimed | |
GenomicInteractionNodes | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
GenomicOZone | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, biovizBase, ensembldb, ggbio. |
GenomicPlot | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, RCAS, genomation. |
GenomicScores | Unclaimed | |
GenVisR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
GeoDiff | Unclaimed | Incomplete Bioc dependencies: GeomxTools. |
GeoTcgaData | Unclaimed | |
gmapR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
gmoviz | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
GNOSIS | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, RTCGAToolbox, TCGAutils, cBioPortalData. |
GOfuncR | Unclaimed | |
GOpro | Unclaimed | |
GOTHiC | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
GRaNIE | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, ensembldb. |
GreyListChIP | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
GSReg | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, OrganismDbi. |
GSVA | Unclaimed | |
GUIDEseq | Unclaimed | Incomplete Bioc dependencies: BSgenome, CRISPRseek, ChIPpeakAnno, GenomicFeatures, ensembldb, regioneR. |
Guitar | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
gwasurvivr | Unclaimed | Incomplete Bioc dependencies: BSgenome, GWASTools, GenomicFeatures, VariantAnnotation. |
GWENA | Unclaimed | |
HarmonizR | Unclaimed | |
hermes | Unclaimed | |
hiAnnotator | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
HiCDCPlus | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicInteractions, Gviz, VariantAnnotation, biovizBase, ensembldb. |
HiLDA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures. |
hiReadsProcessor | Unclaimed | Incomplete Bioc dependencies: BSgenome, hiAnnotator. |
HTSeqGenie | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, VariantTools, gmapR. |
icetea | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
iCheck | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, lumi, methylumi, minfi. |
iCNV | Unclaimed | Incomplete Bioc dependencies: BSgenome, CODEX. |
ideal | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, goseq, pcaExplorer. |
igvR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
IMAS | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, IVAS. |
iNETgrate | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, OrganismDbi, bumphunter, minfi. |
InPAS | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, cleanUpdTSeq. |
INSPEcT | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
intansv | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, biovizBase, ensembldb, ggbio. |
IntEREst | Unclaimed | Incomplete Bioc dependencies: BSgenome, DEXSeq, GenomicFeatures, GenomicFiles, VariantAnnotation. |
ipdDb | Unclaimed | |
iSEEhub | Unclaimed | |
IsoformSwitchAnalyzeR | Unclaimed | Incomplete Bioc dependencies: BSgenome, DEXSeq, GenomicFeatures, ensembldb, tximeta. |
isomiRs | Unclaimed | |
ITALICS | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
IVAS | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
katdetectr | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
LACE | Unclaimed | |
lineagespot | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
lipidr | Unclaimed | |
lisaClust | Unclaimed | Incomplete Bioc dependencies: ClassifyR, spicyR. |
m6Aboost | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
Macarron | Unclaimed | Incomplete Bioc dependencies: Maaslin2. |
MADSEQ | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
MAGAR | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, RnBeads, bumphunter, crlmm, methylumi, minfi, oligoClasses. |
magpie | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, TRESS. |
maser | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
mastR | Unclaimed | |
MatrixQCvis | Unclaimed | |
MatrixRider | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, TFBSTools. |
mBPCR | Unclaimed | Incomplete Bioc dependencies: GWASTools, oligoClasses. |
mCSEA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, OrganismDbi, VariantAnnotation, biovizBase, ensembldb. |
MEAL | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, bumphunter, ensembldb, methylumi, minfi, missMethyl. |
MEAT | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, lumi, methylumi, minfi, wateRmelon. |
MEDIPS | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
MetaboAnnotation | Unclaimed | |
MetaboSignal | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, MWASTools, ensembldb, mygene. |
MetaCyto | Unclaimed | Incomplete Bioc dependencies: FlowSOM. |
MethReg | Unclaimed | Incomplete Bioc dependencies: sesame. |
methrix | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
MethylAid | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi. |
methylCC | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, bsseq, bumphunter, minfi. |
methylclock | Unclaimed | Incomplete Bioc dependencies: AnnotationHubData, ExperimentHubData, GenomicFeatures, OrganismDbi, bumphunter, minfi. |
methylGSA | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, methylumi, minfi, missMethyl. |
methylPipe | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
MethylSeekR | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
microbiomeMarker | Unclaimed | Incomplete Bioc dependencies: ANCOMBC. |
mimager | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
MineICA | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, lumi, methylumi, minfi. |
MinimumDistance | Unclaimed | Incomplete Bioc dependencies: BSgenome, VanillaICE, crlmm, oligoClasses. |
MIRA | Unclaimed | Incomplete Bioc dependencies: BSgenome, bsseq. |
MiRaGE | Unclaimed | |
miRLAB | Unclaimed | Incomplete Bioc dependencies: TCGAbiolinks. |
missMethyl | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, methylumi, minfi. |
mitoClone2 | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, deepSNV. |
MLInterfaces | Unclaimed | |
MMDiff2 | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
MMUPHin | Unclaimed | Incomplete Bioc dependencies: Maaslin2. |
moanin | Unclaimed | |
monaLisa | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, TFBSTools. |
Moonlight2R | Unclaimed | |
MoonlightR | Unclaimed | Incomplete Bioc dependencies: TCGAbiolinks. |
Motif2Site | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
motifbreakR | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicFeatures, Gviz, TFBSTools, VariantAnnotation, biovizBase, ensembldb, motifStack. |
MouseFM | Unclaimed | |
msgbsR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, biovizBase, easyRNASeq, ensembldb, ggbio. |
MSnID | Unclaimed | |
MSstatsBig | Unclaimed | Incomplete Bioc dependencies: MSstats. |
MSstatsLiP | Unclaimed | Incomplete Bioc dependencies: MSstats, MSstatsPTM, MSstatsTMT. |
MSstatsPTM | Unclaimed | Incomplete Bioc dependencies: MSstats, MSstatsTMT. |
MSstatsShiny | Unclaimed | Incomplete Bioc dependencies: MSstats, MSstatsPTM, MSstatsTMT. |
MSstatsTMT | Unclaimed | Incomplete Bioc dependencies: MSstats. |
multicrispr | Unclaimed | Incomplete Bioc dependencies: BSgenome, CRISPRseek, GenomicFeatures, VariantAnnotation, biovizBase, ensembldb, karyoploteR, regioneR. |
multiGSEA | Unclaimed | |
multiWGCNA | Unclaimed | |
MungeSumstats | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
muscat | Unclaimed | Incomplete Bioc dependencies: variancePartition. |
musicatk | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, decompTumor2Sig. |
mygene | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
myvariant | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
NADfinder | Unclaimed | Incomplete Bioc dependencies: ATACseqQC, BSgenome, CNEr, ChIPpeakAnno, GenomicFeatures, GenomicScores, Gviz, TFBSTools, VariantAnnotation, biovizBase, ensembldb, motifStack, regioneR, trackViewer. |
NanoMethViz | Unclaimed | Incomplete Bioc dependencies: BSgenome, bsseq. |
nanotatoR | Unclaimed | |
NBAMSeq | Unclaimed | |
nearBynding | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
netZooR | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi, quantro, yarn. |
NoRCE | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
octad | Unclaimed | Incomplete Bioc dependencies: EDASeq, GSVA, GenomicFeatures, RUVSeq. |
OGRE | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
oligoClasses | Unclaimed | |
OmaDB | Unclaimed | |
omicRexposome | Unclaimed | Incomplete Bioc dependencies: rexposome. |
OMICsPCA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, HelloRanges, VariantAnnotation. |
ontoProc | Unclaimed | |
oppar | Unclaimed | Incomplete Bioc dependencies: GSVA. |
ORFhunteR | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
ORFik | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures. |
Organism.dplyr | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
OUTRIDER | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
OutSplice | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Repitools. |
pageRank | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, TFBSTools, motifmatchr. |
pairedGSEA | Unclaimed | Incomplete Bioc dependencies: DEXSeq. |
partCNV | Unclaimed | |
pcaExplorer | Unclaimed | |
PDATK | Unclaimed | |
pdInfoBuilder | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
periodicDNA | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
phantasus | Unclaimed | |
phemd | Unclaimed | Incomplete Bioc dependencies: destiny, monocle. |
PhyloProfile | Unclaimed | Incomplete Bioc dependencies: OmaDB. |
PING | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
pipeFrame | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
podkat | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
pogos | Unclaimed | Incomplete Bioc dependencies: ontoProc. |
preciseTAD | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, rCGH. |
primirTSS | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicFeatures, GenomicScores, Gviz, TFBSTools, VariantAnnotation, biovizBase, ensembldb. |
proActiv | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
proBAMr | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
profileplyr | Unclaimed | Incomplete Bioc dependencies: ChIPseeker, GenomicFeatures, rGREAT. |
pRolocGUI | Unclaimed | Incomplete Bioc dependencies: MLInterfaces, pRoloc. |
Prostar | Unclaimed | Incomplete Bioc dependencies: DAPAR. |
ProteoDisco | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
psichomics | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, VariantAnnotation, bumphunter, derfinder, recount. |
PureCN | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
pwOmics | Unclaimed | |
qsea | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
qsmooth | Unclaimed | |
qsvaR | Unclaimed | |
quantro | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi. |
R3CPET | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, biovizBase, ensembldb, ggbio. |
r3Cseq | Unclaimed | |
R453Plus1Toolbox | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
raer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures. |
RAIDS | Unclaimed | Incomplete Bioc dependencies: BSgenome, GENESIS, GWASTools, GenomicFeatures, SeqVarTools, VariantAnnotation, ensembldb. |
ramwas | Unclaimed | |
RareVariantVis | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicScores, VariantAnnotation. |
RCAS | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, genomation. |
rCGH | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
recountmethylation | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi. |
recoup | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
REDseq | Unclaimed | Incomplete Bioc dependencies: BSgenome, ChIPpeakAnno, GenomicFeatures, ensembldb, regioneR. |
RegionalST | Unclaimed | |
regioneReloaded | Unclaimed | Incomplete Bioc dependencies: BSgenome, regioneR. |
regionReport | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, VariantAnnotation, bumphunter, derfinder. |
regutools | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
REMP | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, bumphunter, minfi. |
Repitools | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
RepViz | Unclaimed | |
RESOLVE | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, MutationalPatterns, VariantAnnotation. |
restfulSE | Unclaimed | |
rGADEM | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
RgnTX | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, regioneR. |
rgsepd | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, goseq. |
RiboCrypt | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, ORFik. |
RiboDiPA | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
RiboProfiling | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, biovizBase, ensembldb, ggbio. |
ribosomeProfilingQC | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, EDASeq, GenomicFeatures, RUVSeq, TFBSTools, motifStack. |
RITAN | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, ensembldb. |
RLSeq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, regioneR. |
Rmmquant | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
RNAAgeCalc | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, VariantAnnotation, bumphunter, derfinder, recount. |
rnaEditr | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter. |
RNAmodR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
RNAmodR.AlkAnilineSeq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, RNAmodR, VariantAnnotation, biovizBase, ensembldb. |
RNAmodR.ML | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, RNAmodR, VariantAnnotation, biovizBase, ensembldb. |
RNAmodR.RiboMethSeq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, RNAmodR, VariantAnnotation, biovizBase, ensembldb. |
RnaSeqSampleSize | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, VariantAnnotation, bumphunter, derfinder, recount. |
RnBeads | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, methylumi, minfi. |
Rqc | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, VariantAnnotation, biovizBase, ensembldb. |
RTCGAToolbox | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, TCGAutils. |
RTNduals | Unclaimed | Incomplete Bioc dependencies: RTN. |
RTNsurvival | Unclaimed | Incomplete Bioc dependencies: RTN, RTNduals. |
rTRMui | Unclaimed | |
SARC | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
SBGNview | Unclaimed | |
SCAN.UPC | Unclaimed | Incomplete Bioc dependencies: oligo, oligoClasses. |
scanMiRApp | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, ensembldb, scanMiR. |
scAnnotatR | Unclaimed | |
scBFA | Unclaimed | Incomplete Bioc dependencies: zinbwave. |
scClassify | Unclaimed | Incomplete Bioc dependencies: Cepo. |
scFeatures | Unclaimed | Incomplete Bioc dependencies: AUCell, GSVA, GenomicFeatures, ensembldb. |
scmeth | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, annotatr, bsseq, regioneR. |
scone | Unclaimed | Incomplete Bioc dependencies: EDASeq, GenomicFeatures, RUVSeq. |
SCOPE | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
scoreInvHap | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
scPipe | Unclaimed | |
scruff | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, biovizBase, ensembldb, ggbio. |
scTensor | Unclaimed | |
scTGIF | Unclaimed | |
scTreeViz | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, OrganismDbi, bumphunter, ensembldb, epivizr, epivizrData. |
segmenter | Unclaimed | Incomplete Bioc dependencies: ChIPseeker, GenomicFeatures. |
selectKSigs | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, HiLDA. |
seq2pathway | Unclaimed | |
seqArchRplus | Unclaimed | Incomplete Bioc dependencies: BSgenome, ChIPseeker, GenomicFeatures, seqArchR. |
seqCAT | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
SeqGSEA | Unclaimed | |
sesame | Unclaimed | |
SEtools | Unclaimed | |
SGCP | Unclaimed | |
shinyepico | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi. |
shinyMethyl | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi. |
SigCheck | Unclaimed | Incomplete Bioc dependencies: MLInterfaces. |
signatureSearch | Unclaimed | |
signeR | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
signifinder | Unclaimed | Incomplete Bioc dependencies: GSVA, GenomicFeatures, consensusOV, ensembldb. |
SigsPack | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
SingleMoleculeFootprinting | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, QuasR, VariantAnnotation. |
singscore | Unclaimed | |
sitadela | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
skewr | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, lumi, methylumi, minfi, wateRmelon. |
slalom | Unclaimed | |
SMITE | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, goseq. |
SNPhood | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
SomaticSignatures | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, VariantAnnotation, biovizBase, ensembldb, ggbio. |
SOMNiBUS | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, annotatr, bsseq, regioneR. |
SparseSignatures | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
SpatialDecon | Unclaimed | Incomplete Bioc dependencies: GeomxTools. |
spatialHeatmap | Unclaimed | |
SpatialOmicsOverlay | Unclaimed | Incomplete Bioc dependencies: GeomxTools. |
spatzie | Unclaimed | Incomplete Bioc dependencies: BSgenome, CNEr, GenomicFeatures, GenomicInteractions, Gviz, TFBSTools, VariantAnnotation, biovizBase, ensembldb, motifmatchr. |
spicyR | Unclaimed | Incomplete Bioc dependencies: ClassifyR. |
spiky | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
SpliceWiz | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
SplicingGraphs | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
SPLINTER | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
SPsimSeq | Unclaimed | |
srnadiff | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
sSNAPPY | Unclaimed | |
standR | Unclaimed | Incomplete Bioc dependencies: EDASeq, GenomicFeatures, RUVSeq. |
strandCheckR | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
StructuralVariantAnnotation | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
svaNUMT | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, StructuralVariantAnnotation, VariantAnnotation. |
svaRetro | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, StructuralVariantAnnotation, VariantAnnotation. |
SVMDO | Unclaimed | |
tadar | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
TAPseq | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures. |
TBSignatureProfiler | Unclaimed | Incomplete Bioc dependencies: GSVA, singscore. |
TCGAbiolinks | Unclaimed | |
TDbasedUFEadv | Unclaimed | Incomplete Bioc dependencies: RTCGA. |
TEKRABber | Unclaimed | |
tenXplore | Unclaimed | Incomplete Bioc dependencies: ontoProc, restfulSE. |
terraTCGAdata | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, TCGAutils. |
TFEA.ChIP | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
TFHAZ | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, ORFik. |
TFutils | Unclaimed | |
TimiRGeN | Unclaimed | |
TissueEnrich | Unclaimed | |
TitanCNA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
tLOH | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
TNBC.CMS | Unclaimed | Incomplete Bioc dependencies: GSVA. |
TOP | Unclaimed | Incomplete Bioc dependencies: ClassifyR. |
trackViewer | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensembldb. |
transcriptR | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
tRanslatome | Unclaimed | |
traseR | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
treekoR | Unclaimed | Incomplete Bioc dependencies: FlowSOM, diffcyt. |
TRESS | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
tricycle | Unclaimed | |
TVTB | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, VariantAnnotation, biovizBase, ensemblVEP, ensembldb. |
txcutr | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
Ularcirc | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Organism.dplyr. |
UMI4Cats | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, regioneR. |
uncoverappLib | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, Gviz, OrganismDbi, VariantAnnotation, biovizBase, ensembldb. |
Uniquorn | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
uSORT | Unclaimed | Incomplete Bioc dependencies: monocle. |
VanillaICE | Unclaimed | Incomplete Bioc dependencies: BSgenome, crlmm, oligoClasses. |
VarCon | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
VariantFiltering | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicScores, Gviz, VariantAnnotation, biovizBase, ensembldb. |
VariantTools | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |
VaSP | Unclaimed | Incomplete Bioc dependencies: ballgown. |
VCFArray | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, GenomicFiles, VariantAnnotation. |
vtpnet | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation, gwascat. |
vulcan | Unclaimed | Incomplete Bioc dependencies: BSgenome, ChIPpeakAnno, DiffBind, GenomicFeatures, GreyListChIP, ensembldb, regioneR. |
wateRmelon | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, lumi, methylumi, minfi. |
wavClusteR | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures. |
Xeva | Unclaimed | Incomplete Bioc dependencies: PharmacoGx. |
XNAString | Unclaimed | Incomplete Bioc dependencies: BSgenome. |
YAPSA | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, OrganismDbi, SomaticSignatures, VariantAnnotation, biovizBase, ensembldb, ggbio. |
yarn | Unclaimed | Incomplete Bioc dependencies: GenomicFeatures, bumphunter, minfi, quantro. |
zenith | Unclaimed | Incomplete Bioc dependencies: EnrichmentBrowser, variancePartition. |
zinbwave | Unclaimed | |
ZygosityPredictor | Unclaimed | Incomplete Bioc dependencies: BSgenome, GenomicFeatures, VariantAnnotation. |