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CHANGELOG.md

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calour changelog

Next version

  • Add read_qiime2() function to enable reading of qiime2 feature tables artifacts with the associated representative sequences and taxonomy artifacts (without the need to install qiime2)

Version 2019.5.1

  • Add reverse parameter to the sorting functions.
  • Fix minor documentation formatting issues
  • Update installation instruction with conda install from conda-forge
  • Change the column names added to Experiment.feature_metadata after running Experiment.correlation or Experiment.diff_abundance

Version 2018.10.1

  • Add notebook tutorial for calour.training module for classification and regression.
  • Add notebook tutorial for metabolome data analysis
  • Add plot functions in calour.training module
  • Fix a bug in Expriment.aggregate_by_metadata when the number in the data table is overflow the int type.
  • Add CONTRIBUTING.md as guidelines

Version 2018.5.2

  • Add export_html() function to save heatmap as an interactive html heatmap

Version 2018.5.1

  • In calour.training module, added functions to do regression and classification and to visualize their results. SortedStratifiedKFold and RepeatedSortedStratifiedKFold are aslo added for stratified cross validation for regression. They are recommended.