Grow your team on GitHub
GitHub is home to over 28 million developers working together. Join them to grow your own development teams, manage permissions, and collaborate on projects.Sign up
The Biological Observation Matrix (BIOM) Format Project
Administration website for the Knight Lab
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
A very fast and scalable phylogenetic visualization viewer
Qiita - A multi-omics databasing effort
SortMeRNA: next-generation sequence filtering and alignment tool
The website for the American Gut Project participant portal
Emperor a tool for the analysis and visualization of large microbial ecology datasets
Deblur is a greedy deconvolution algorithm based on known read error profiles.
conda recipes for bioinformatic tools like blast+, infernal, etc.
exploratory and interactive microbiome analyses based on heatmaps
Elucidating sampling effort for microbial analysis studies
compositional data analysis and visualization toolbox
Hierarchical orderings for mass spectrometry data
Automated taxonomy decoration onto a tree
QIIME2 plugin for fragment insertion
Sample search by metadata and features
A QIIME2 plugin for working with and processing American Gut data
Workflow for detecting genome-wide horizontal gene transfers
Code repository of the Earth Microbiome Project.
Multidimensional scaling algorithms for microbiology-ecology datasets.
A QIIME2 plugin for benchmarking high precision genome matching from amplicon data
descrete False Discovery Rate method
Microbial analysis in TCGA data
annotation pipeline for microbial genomes and metagenomes