Administration website for the Knight Lab
scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.
The website for the American Gut Project participant portal
The Biological Observation Matrix (BIOM) Format Project
Workflow for detecting genome-wide horizontal gene transfers
Qiita - A QIIME databasing effort
Emperor a tool for the analysis and visualization of large microbial ecology datasets
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
Data, code and analysis results for the Earth Microbiome Project.
American Gut open-access data and IPython notebooks
Microbial analysis in TCGA data
Deblur is a greedy deconvolution algorithm based on known read error profiles.
conda recipes for bioinformatic tools like blast+, infernal, etc.
Repository to hold new mds approximations code. The goal is to test all the ones we have access too and just move the best to skbio.
Confirming specific taxonomic groups within your samples.
Validate tabular bioinformatics file formats in Google Sheets
Recipes for bioinformatics analyses with scikit-bio
Easy dispatched compute in a Tornado environment
Request For Comments (RFCs) for scikit-bio.