@biocore

biocore

Collaboratively developed bioinformatics software.

Python 2 11

labadmin

Administration website for the Knight Lab

Updated Sep 24, 2016

scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

Updated Sep 23, 2016

Python 4 19

american-gut-web

The website for the American Gut Project participant portal

Updated Sep 23, 2016

Python 28 45

biom-format

The Biological Observation Matrix (BIOM) Format Project

Updated Sep 23, 2016

Python 1 6

WGS-HGT

Workflow for detecting genome-wide horizontal gene transfers

Updated Sep 23, 2016

Python 30 36

qiita

Qiita - A QIIME databasing effort

Updated Sep 22, 2016

JavaScript 36 29

emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets

Updated Sep 16, 2016

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

Updated Sep 15, 2016

OpenEdge ABL 15 16

emp

Data, code and analysis results for the Earth Microbiome Project.

Updated Sep 15, 2016

Jupyter Notebook 41 46

American-Gut

American Gut open-access data and IPython notebooks

Updated Sep 12, 2016

Python 0 2

tcga

Microbial analysis in TCGA data

Updated Sep 8, 2016

Jupyter Notebook 0 4

gneiss

Updated Sep 1, 2016

Python 2 11

deblur

Deblur is a greedy deconvolution algorithm based on known read error profiles.

Updated Aug 31, 2016

Python 2 8

conda-recipes

conda recipes for bioinformatic tools like blast+, infernal, etc.

Updated Aug 26, 2016

Python 2 3

mds-approximations

Repository to hold new mds approximations code. The goal is to test all the ones we have access too and just move the best to skbio.

Updated Jul 9, 2016

Python 9 4

Platypus-Conquistador

Confirming specific taxonomic groups within your samples.

Updated Jun 28, 2016

JavaScript 3 2

Keemei

Validate tabular bioinformatics file formats in Google Sheets

Updated Jun 17, 2016

Jupyter Notebook 24 10

scikit-bio-cookbook

Recipes for bioinformatics analyses with scikit-bio

Updated Jun 15, 2016

Python 0 5

mustached-octo-ironman

Easy dispatched compute in a Tornado environment

Updated May 27, 2016

scikit-bio-rfcs

Request For Comments (RFCs) for scikit-bio.

Updated May 26, 2016