@biocore

biocore

Collaboratively developed bioinformatics software.

Python 0 2

gneiss

Updated Jul 29, 2016

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

Updated Jul 29, 2016

Python 1 8

labadmin

Administration website for the Knight Lab

Updated Jul 28, 2016

scikit-bio

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

Updated Jul 28, 2016

JavaScript 36 26

emperor

Emperor a tool for the analysis and visualization of large microbial ecology datasets

Updated Jul 28, 2016

Jupyter Notebook 38 43

American-Gut

American Gut open-access data and IPython notebooks

Updated Jul 28, 2016

Python 29 34

qiita

Qiita - A QIIME databasing effort

Updated Jul 27, 2016

Python 2 5

WGS-HGT

Workflow for detecting genome-wide horizontal gene transfers

Updated Jul 26, 2016

Python 28 42

biom-format

The Biological Observation Matrix (BIOM) Format Project

Updated Jul 25, 2016

Python 2 10

deblur

Deblur is a greedy deconvolution algorithm based on known read error profiles.

Updated Jul 23, 2016

Python 2 3

mds-approximations

Repository to hold new mds approximations code. The goal is to test all the ones we have access too and just move the best to skbio.

Updated Jul 9, 2016

Python 4 17

american-gut-web

The website for the American Gut Project participant portal

Updated Jul 9, 2016

OpenEdge ABL 15 14

emp

Data, code and analysis results for the Earth Microbiome Project.

Updated Jun 29, 2016

Python 9 4

Platypus-Conquistador

Confirming specific taxonomic groups within your samples.

Updated Jun 28, 2016

JavaScript 3 2

Keemei

Validate tabular bioinformatics file formats in Google Sheets

Updated Jun 17, 2016

Jupyter Notebook 24 10

scikit-bio-cookbook

Recipes for bioinformatics analyses with scikit-bio

Updated Jun 15, 2016

Python 0 5

mustached-octo-ironman

Easy dispatched compute in a Tornado environment

Updated May 27, 2016

scikit-bio-rfcs

Request For Comments (RFCs) for scikit-bio.

Updated May 26, 2016

biocore.github.io

Updated May 5, 2016

Python 9 14

pyqi

Tools for developing and testing command line interfaces in Python.

Updated May 3, 2016