Skip to content

biocore

- Explore
- All features
- Documentation
- GitHub Skills
- Blog
- For
- Enterprise
- Teams
- Startups
- Education
- By Solution
- CI/CD & Automation
- DevOps
- DevSecOps
- Case Studies
- Customer Stories
- Resources
- GitHub Sponsors
  Fund open source developers
- The ReadME Project
  GitHub community articles
- Repositories
- Topics
- Trending
- Collections
Pricing

In this organization All GitHub

No suggested jump to results

In this organization All GitHub
Search All GitHub
In this organization All GitHub

biocore

Collaboratively developed bioinformatics software.

56 followers
Cyberspace
http://biocore.github.io/

Overview
Repositories
Projects
Packages
People

More

Overview
Repositories
Projects
Packages
People

Pinned

scikit-bio Public

scikit-bio is an open-source, BSD-licensed, Python package providing data structures, algorithms, and educational resources for bioinformatics.

Python 755 246
gneiss Public

compositional data analysis toolbox

Jupyter Notebook 50 27

Repositories

Type

Select type

All Public Sources Forks Archived Mirrors Templates

Language

Select language

All C C++ CSS HTML JavaScript Jinja Jupyter Notebook Python

Sort

Select order

Last updated Name Stars

metagenomics_pooling_notebook Public
Jupyter notebooks to assist with sample processing

Jupyter Notebook 7 MIT 12 21 (2 issues need help) 4 Updated Mar 20, 2023
unifrac-binaries Public

C++ 0 BSD-3-Clause 4 4 0 Updated Mar 20, 2023
microsetta-private-api Public
A private microservice to support The Microsetta Initiative

Python 4 BSD-3-Clause 16 68 4 Updated Mar 20, 2023
mg-scripts Public
Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

Python 0 BSD-3-Clause 4 23 1 Updated Mar 14, 2023
microsetta-interface Public
The Microsetta participant facing user interface

Jinja 0 BSD-3-Clause 14 44 4 Updated Mar 13, 2023
biom-format Public
The Biological Observation Matrix (BIOM) Format Project

Python 76 91 25 0 Updated Mar 13, 2023
tax2tree Public
Automated taxonomy decoration onto a tree

Python 13 BSD-3-Clause 10 7 2 Updated Mar 10, 2023
microsetta-admin Public

Python 0 BSD-3-Clause 8 13 2 Updated Mar 9, 2023
wol Public
Reference Phylogeny for Bacterial and Archaeal Genomes

Jupyter Notebook 17 BSD-3-Clause 18 0 0 Updated Feb 16, 2023
q2-greengenes2 Public
A QIIME 2 plugin for interaction with the Greengenes2 database

Python 7 BSD-3-Clause 1 2 0 Updated Feb 15, 2023

View all repositories

People

Top languages

Loading…

Most used topics

Loading…

Footer

© 2023 GitHub, Inc.

Footer navigation

Terms
Privacy
Security
Status
Docs
Contact GitHub
Pricing
API
Training
Blog
About

You can’t perform that action at this time.

You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window. Reload to refresh your session.