Deblur is a greedy deconvolution algorithm based on known read error profiles.
Some of the code in the package deblur has been derived from QIIME. The contributors to these specific QIIME modules have granted permission for this porting to take place and put under the BSD license.
conda install -c biocore deblur
python setup.py install
The input to deblur workflow is a demultiplexed FASTA or FASTQ file. The deblur algorithm is designed to work on individual samples.
deblur workflow --seqs-fp all_samples.fna --ref-fp db.fna --output-dir output