/
test_visibility_controller.js
211 lines (183 loc) · 8.83 KB
/
test_visibility_controller.js
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requirejs([
'jquery',
'underscore',
'model',
'view',
'viewcontroller',
'slickgrid',
'visibilitycontroller'
], function($, _, model, DecompositionView, viewcontroller, SlickGrid,
VisibilityController) {
$(document).ready(function() {
var EmperorAttributeABC = viewcontroller.EmperorAttributeABC;
var DecompositionModel = model.DecompositionModel;
module('VisibilityController', {
setup: function() {
this.sharedDecompositionViewDict = {};
// setup function
var data = {name: 'pcoa', sample_ids: ['PC.636', 'PC.635'],
coordinates: [[-0.276542, -0.144964, 0.066647, -0.067711,
0.176070, 0.072969, -0.229889, -0.046599],
[-0.237661, 0.046053, -0.138136, 0.159061,
-0.247485, -0.115211, -0.112864, 0.064794]],
percents_explained: [26.6887048633, 16.2563704022,
13.7754129161, 11.217215823,
10.024774995, 8.22835130237,
7.55971173665, 6.24945796136]};
var md_headers = ['SampleID', 'LinkerPrimerSequence', 'Treatment',
'DOB'];
var metadata = [['PC.636', 'YATGCTGCCTCCCGTAGGAGT', 'Control',
'20070314'],
['PC.635', 'YATGCTGCCTCCCGTAGGAGT', 'Fast',
'20071112']];
decomp = new DecompositionModel(data, md_headers, metadata);
var dv = new DecompositionView(decomp);
this.sharedDecompositionViewDict.scatter = dv;
data = {name: 'biplot', sample_ids: ['tax_1', 'tax_2'],
coordinates: [[-1, -0.144964, 0.066647, -0.067711, 0.176070,
0.072969, -0.229889, -0.046599],
[-0.237661, 0.046053, -0.138136, 0.159061,
-0.247485, -0.115211, -0.112864, 0.064794]],
percents_explained: [26.6887048633, 16.2563704022,
13.7754129161, 11.217215823, 10.024774995,
8.22835130237, 7.55971173665,
6.24945796136]};
md_headers = ['SampleID', 'Gram'];
metadata = [['tax_1', '1'], ['tax_2', '0']];
decomp = new DecompositionModel(data, md_headers, metadata);
this.dv = new DecompositionView(decomp);
this.sharedDecompositionViewDict.biplot = this.dv;
// jackknifed specific
data = {name: 'pcoa', sample_ids: ['PC.636', 'PC.635', 'PC.634'],
coordinates: [[-0.276542, -0.144964, 0.066647, -0.067711,
0.176070, 0.072969, -0.229889, -0.046599],
[-0.237661, 0.046053, -0.138136, 0.159061,
-0.247485, -0.115211, -0.112864, 0.064794],
[-0.237661, 0.046053, -0.138136, 0.159061,
-0.247485, -0.115211, -0.112864, 0.064794]
],
percents_explained: [26.6887048633, 16.2563704022,
13.7754129161, 11.217215823,
10.024774995, 8.22835130237,
7.55971173665, 6.24945796136],
ci: [[0.5, 0.68, -1.64, 0.56, 1.87, 0.75, 0.61, 1.14],
[0.09, 0.8, -0.07, -1.52, 0.86, -0.2, -2.63, -0.57],
[0.21, -0.85, 0.19, -1.88, -1.19, -1.38, 1.55, -0.1]]
};
md_headers = ['SampleID', 'Mixed', 'Treatment', 'DOB'];
metadata = [['PC.636', '14.2', 'Control', '20070314'],
['PC.635', 'StringValue', 'Fast', '20071112'],
['PC.634', '14.7', 'Fast', '20071112']];
decomp = new DecompositionModel(data, md_headers, metadata);
this.jackknifedDecView = new DecompositionView(decomp);
},
teardown: function() {
this.sharedDecompositionViewDict = undefined;
$('#fooligans').remove();
this.decomp = undefined;
}
});
test('Constructor tests', function(assert) {
var container = $('<div id="does-not-exist" style="height:11px; ' +
'width:12px"></div>');
assert.ok(VisibilityController.prototype instanceof EmperorAttributeABC);
var controller = new VisibilityController(container,
this.sharedDecompositionViewDict);
equal(controller.title, 'Visibility');
var testColumn = controller.bodyGrid.getColumns()[0];
equal(testColumn.field, 'value');
// verify the visibility value is set properly
equal(controller.getMetadataField(), null);
});
test('Testing setPlottableAttributes helper function', function(assert) {
// testing with one plottable
var idx = 0;
plottables = [{idx: idx}];
equal(this.dv.markers[idx].visible, true);
equal(this.dv.markers[idx + 1].visible, true);
VisibilityController.prototype.setPlottableAttributes(this.dv, false,
plottables);
equal(this.dv.needsUpdate, true);
// testing with multiple plottable
plottables = [{idx: idx}, {idx: idx + 1}];
equal(this.dv.markers[idx].visible, false);
equal(this.dv.markers[idx + 1].visible, true);
VisibilityController.prototype.setPlottableAttributes(this.dv, true,
plottables);
equal(this.dv.markers[idx].visible, true);
equal(this.dv.markers[idx + 1].visible, true);
equal(this.dv.needsUpdate, true);
});
test('Testing setPlottableAttributes (jackknifed)', function(assert) {
// testing with one plottable
var idx = 0, dv = this.jackknifedDecView;
plottables = [{idx: idx}];
// all should be visible
equal(dv.markers[0].visible, true);
equal(dv.markers[1].visible, true);
equal(dv.ellipsoids[0].visible, true);
equal(dv.ellipsoids[1].visible, true);
VisibilityController.prototype.setPlottableAttributes(dv, false,
plottables);
equal(dv.needsUpdate, true);
// sample zero should be hidden
equal(dv.markers[0].visible, false);
equal(dv.markers[1].visible, true);
equal(dv.ellipsoids[0].visible, false);
equal(dv.ellipsoids[1].visible, true);
// testing with multiple plottables
plottables = [{idx: idx}, {idx: idx + 1}];
VisibilityController.prototype.setPlottableAttributes(dv, true,
plottables);
equal(dv.needsUpdate, true);
// none should be visible
equal(dv.markers[0].visible, true);
equal(dv.markers[1].visible, true);
equal(dv.ellipsoids[0].visible, true);
equal(dv.ellipsoids[1].visible, true);
});
test('Testing toJSON', function() {
var container = $('<div id="does-not-exist" style="height:11px; ' +
'width:12px"></div>');
var controller = new VisibilityController(container,
this.sharedDecompositionViewDict);
controller.setMetadataField('DOB');
var obs = controller.toJSON();
var exp = {category: 'DOB', data: {'20070314': true, '20071112': true}};
deepEqual(obs, exp);
});
test('Testing fromJSON', function() {
var json = {category: 'SampleID',
data: {'PC.636': false, 'PC.635': true}};
var container = $('<div id="does-not-exist" style="height:11px; ' +
'width:12px"></div>');
var controller = new VisibilityController(container,
this.sharedDecompositionViewDict);
controller.fromJSON(json);
var idx = 0;
equal(controller.decompViewDict.scatter.markers[idx].visible, false);
equal(controller.decompViewDict.scatter.markers[idx + 1].visible, true);
});
test('Testing toJSON', function() {
var container = $('<div id="does-not-exist" style="height:11px; ' +
'width:12px"></div>');
var controller = new VisibilityController(container,
this.sharedDecompositionViewDict);
controller.setMetadataField(null);
var obs = controller.toJSON();
var exp = {category: null, data: {}};
deepEqual(obs, exp);
});
test('Testing fromJSON', function() {
var json = {category: null,
data: {}};
var container = $('<div id="does-not-exist" style="height:11px; ' +
'width:12px"></div>');
var controller = new VisibilityController(container,
this.sharedDecompositionViewDict);
controller.fromJSON(json);
equal(controller.decompViewDict.scatter.markers[0].visible, true);
equal(controller.decompViewDict.scatter.markers[1].visible, true);
});
});
});