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environment.yml
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environment.yml
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name: gneiss
channels: !!python/tuple
- https://conda.anaconda.org/bioconda
- https://conda.anaconda.org/biocore
- https://conda.anaconda.org/qiime2
- defaults
dependencies:
- anaconda::matplotlib=1.5.1=np111py35_0
- anaconda::numexpr=2.6.1=np111py35_1
- anaconda::numpy=1.11.2=py35_0
- anaconda::pandas=0.19.1=np111py35_0
- anaconda::pytables=3.2.2=np111py35_4
- anaconda::scikit-bio=0.5.1=np111py35_0
- anaconda::scipy=0.18.1=np111py35_0
- bioconda::click=6.6=py35_0
- bokeh=0.12.4=py35_0
- bz2file=0.98=py35_0
- cachecontrol=0.11.6=py35_0
- contextlib2=0.4.0=py35_0
- cycler=0.10.0=py35_0
- decorator=4.0.10=py35_0
- entrypoints=0.2.2=py35_0
- flake8=2.5.1=py35_0
- freetype=2.5.5=1
- future=0.15.2=py35_0
- h5py=2.6.0=np111py35_1
- hdf5=1.8.16=0
- ipykernel=4.0.3=py35_0
- ipython=3.2.3=py35_0
- ipython_genutils=0.1.0=py35_0
- ipywidgets=4.1.1=py35_0
- jinja2=2.8=py35_1
- jsonschema=2.5.1=py35_0
- jupyter=1.0.0=py35_3
- jupyter_client=4.3.0=py35_0
- jupyter_console=5.0.0=py35_0
- jupyter_core=4.1.0=py35_0
- libpng=1.6.22=0
- lockfile=0.12.2=py35_0
- markupsafe=0.23=py35_2
- mccabe=0.3.1=py35_0
- mistune=0.7.2=py35_1
- mkl=11.3.3=0
- natsort=4.0.3=py35_0
- nbconvert=4.2.0=py35_0
- nbformat=4.0.1=py35_0
- nose=1.3.7=py35_1
- notebook=4.2.1=py35_0
- openssl=1.0.2h=1
- patsy=0.4.1=py35_0
- pep8=1.7.0=py35_0
- pip=8.1.2=py35_0
- prompt_toolkit=1.0.9=py35_0
- ptyprocess=0.5.1=py35_0
- pyflakes=1.2.3=py35_0
- pygments=2.1.3=py35_0
- pyparsing=2.1.4=py35_0
- pyqt=4.11.4=py35_3
- python=3.5.2=0
- python-dateutil=2.5.3=py35_0
- python.app=1.2=py35_4
- pytz=2016.4=py35_0
- pyyaml=3.12=py35_0
- pyzmq=15.2.0=py35_1
- qiime2::arrow=0.8.0=py35_0
- qiime2::binaryornot=0.3.0=0_ge797740
- qiime2::biom-format=2.1.5=py35_3
- qiime2::cookiecutter=1.4.0=py35_0
- qiime2::ijson=2.3=py35_0
- qiime2::ipymd=0.1.2=py35_0
- qiime2::jinja2-time=0.2.0=py35_0
- qiime2::poyo=0.4.0=py35_0
- qiime2::python-frontmatter=0.2.1=py35_0
- qiime2::tzlocal=1.3=py35_0
- qiime2::whichcraft=0.4.0=py35_0
- qt=4.8.7=3
- qtconsole=4.0.1=py35_0
- readline=6.2=2
- requests=2.10.0=py35_0
- setuptools=23.0.0=py35_0
- sip=4.16.9=py35_0
- six=1.10.0=py35_0
- sqlite=3.13.0=0
- statsmodels=0.8.0=np111py35_0
- terminado=0.6=py35_0
- tk=8.5.18=0
- tornado=4.3=py35_1
- traitlets=4.2.1=py35_0
- wcwidth=0.1.7=py35_0
- wheel=0.29.0=py35_0
- xz=5.2.2=0
- yaml=0.1.6=0
- zlib=1.2.8=3
- pip:
- alabaster==0.7.9
- appdirs==1.4.0
- appnope==0.1.0
- args==0.1.0
- babel==2.3.4
- backports.shutil-get-terminal-size==1.0.0
- canvas==0.0.1
- chest==0.2.3
- clint==0.5.1
- cloudpickle==0.2.1
- colorama==0.3.7
- coverage==4.1
- coveralls==1.1
- cvxopt==1.1.8
- cython==0.23.5
- dask==0.11.0
- datashader==0.4.0
- datashape==0.5.2
- docopt==0.6.2
- docutils==0.12
- emperor==1.0.0b5
- ete3==3.0.0b35
- gneiss (/Users/mortonjt/Dropbox/UCSD/research/gneiss)==0.3.1
- gnureadline==6.3.3
- heapdict==1.0.0
- igraph==0.1.11
- imagesize==0.7.1
- ipyparallel==5.2.0
- ipython-genutils==0.1.0
- jgraph==0.2.1
- joblib==0.10.2
- jupyter-client==4.3.0
- jupyter-console==5.0.0
- jupyter-core==4.1.0
- llvmlite==0.14.0
- locket==0.2.0
- matplotlib-venn==0.11.4
- msgpack-python==0.4.8
- multipledispatch==0.4.8
- nbdime==0.1.0
- networkx==1.11
- numba==0.29.0
- odo==0.4.2
- packaging==16.8
- partd==0.3.6
- path.py==8.1.2
- pexpect==4.2.1
- pickleshare==0.7.4
- pillow==3.3.1
- pkginfo==1.4.1
- ply==3.9
- prompt-toolkit==1.0.13
- pulp==1.6.5
- pyemd==0.3.0
- pyomo==5.1.1
- pysam==0.9.0
- python-igraph==0.7.1.post6
- python-ternary==1.0
- pyutilib==5.4.1
- q2-composition==2017.3.0.dev0
- q2-feature-table==2017.3.0.dev0
- q2-taxa==2017.3.0.dev0
- q2-types==2017.3.0.dev0
- q2cli (/Users/mortonjt/Dropbox/UCSD/research/q2/q2cli)==2017.3.0.dev0
- q2templates==2017.3.0.dev0
- qcli==0.1.1
- qiime2 (/Users/mortonjt/Dropbox/UCSD/research/q2/qiime2)==2017.3.0.dev0
- requests-toolbelt==0.7.0
- rpy2==2.7.8
- scikit-learn==0.17.1
- seaborn==0.7.1
- simplegeneric==0.8.1
- snowballstemmer==1.2.1
- sourcetracker==2.0.1.dev0
- sphinx==1.4.9
- tables==3.2.2
- tabview==1.4.2
- toolz==0.8.0
- twine==1.8.1
- xarray==0.8.2
- xlrd==0.9.4