/
ag.dbs
22454 lines (22451 loc) · 865 KB
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ag.dbs
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<?xml version="1.0" encoding="UTF-8" ?>
<project name="PostgreSQL" id="Project2769587" database="PostgreSQL" >
<schema name="ag" catalogname="ag" schemaname="ag" >
<table name="ag_consent" >
<column name="ag_login_id" type="uuid" jt="1111" mandatory="y" />
<column name="participant_name" type="varchar" length="200" jt="12" mandatory="y" />
<column name="participant_email" type="varchar" length="2147483647" jt="12" mandatory="y" />
<column name="is_juvenile" type="bool" length="10" jt="-7" />
<column name="parent_1_name" type="varchar" length="200" jt="12" />
<column name="parent_2_name" type="varchar" length="200" jt="12" />
<column name="parent_1_code" type="varchar" length="200" jt="12" />
<column name="parent_2_code" type="varchar" length="200" jt="12" />
<column name="deceased_parent" type="varchar" length="10" jt="12" />
<column name="date_signed" type="date" jt="91" />
<column name="assent_obtainer" type="varchar" length="2147483647" jt="12" />
<column name="age_range" type="varchar" length="2147483647" jt="12" />
<index name="pk_american_gut_consent" unique="PRIMARY_KEY" >
<column name="ag_login_id" />
<column name="participant_name" />
</index>
<index name="idx_american_gut_consent" unique="NORMAL" >
<column name="ag_login_id" />
</index>
<fk name="fk_american_gut_consent" to_schema="ag" to_table="ag_login" >
<fk_column name="ag_login_id" pk="ag_login_id" />
</fk>
</table>
<table name="ag_handout_barcodes" >
<column name="kit_id" type="varchar" jt="12" mandatory="y" />
<column name="barcode" type="varchar" length="9" jt="12" mandatory="y" />
<column name="sample_barcode_file" type="varchar" length="13" jt="12" mandatory="y" />
<index name="idx_handout_barcode_1" unique="NORMAL" >
<column name="kit_id" />
</index>
<index name="pk_ag_handout_barcodes" unique="PRIMARY_KEY" >
<column name="barcode" />
</index>
<index name="idx_handout_barcode_1" unique="NORMAL" >
<column name="kit_id" />
</index>
<fk name="fk_handout_barcode_0" to_schema="ag" to_table="ag_handout_kits" delete_action="cascade" update_action="cascade" >
<fk_column name="kit_id" pk="kit_id" />
</fk>
<fk name="fk_ag_handout_barcodes" to_schema="barcodes" to_table="barcode" >
<fk_column name="barcode" pk="barcode" />
</fk>
</table>
<table name="ag_handout_kits" >
<column name="kit_id" type="varchar" length="9" jt="12" mandatory="y" />
<column name="password" type="varchar" length="60" jt="12" />
<column name="verification_code" type="varchar" length="5" jt="12" />
<column name="swabs_per_kit" type="bigint" length="19" jt="-5" />
<column name="print_results" type="bool" length="1" jt="-7" mandatory="y" >
<defo>'FALSE'</defo>
</column>
<column name="created_on" type="timestamp" jt="93" mandatory="y" >
<defo>current_timestamp</defo>
</column>
<index name="ag_handout_kits_pkey" unique="PRIMARY_KEY" >
<column name="kit_id" />
</index>
</table>
<table name="ag_kit" >
<column name="ag_kit_id" type="uuid" length="2147483647" jt="1111" mandatory="y" >
<defo>ag.uuid_generate_v4()</defo>
</column>
<column name="ag_login_id" type="uuid" length="2147483647" jt="1111" mandatory="y" />
<column name="supplied_kit_id" type="varchar" length="50" jt="12" mandatory="y" />
<column name="kit_password" type="varchar" length="60" jt="12" />
<column name="swabs_per_kit" type="bigint" length="19" jt="-5" mandatory="y" />
<column name="kit_verification_code" type="varchar" length="50" jt="12" />
<column name="kit_verified" type="char" length="1" jt="1" >
<defo>'n'::bpchar</defo>
</column>
<column name="verification_email_sent" type="char" length="1" jt="1" >
<defo>'n'::bpchar</defo>
</column>
<column name="pass_reset_code" type="varchar" length="20" jt="12" />
<column name="pass_reset_time" type="timestamp" length="29" decimal="6" jt="93" />
<column name="print_results" type="bool" length="1" jt="-7" mandatory="y" >
<defo>'FALSE'</defo>
</column>
<column name="open_humans_token" type="varchar" length="64" jt="12" >
<comment><![CDATA[The Open Humans access token corresponding to the Open Humans user that has authorized data sharing with this kit.]]></comment>
</column>
<column name="registered_on" type="timestamp" jt="93" >
<defo>current_timestamp</defo>
</column>
<index name="ag_kit_pkey" unique="PRIMARY_KEY" >
<column name="ag_kit_id" />
</index>
<index name="ag_kit_supplied_kit_id_key" unique="UNIQUE" >
<column name="supplied_kit_id" />
</index>
<index name="ix_ag_kit_login" unique="NORMAL" >
<column name="ag_login_id" />
</index>
<fk name="fk_ag_kit_to_login_id" to_schema="ag" to_table="ag_login" >
<fk_column name="ag_login_id" pk="ag_login_id" />
</fk>
</table>
<table name="ag_kit_barcodes" >
<column name="ag_kit_barcode_id" type="uuid" length="2147483647" jt="1111" mandatory="y" >
<defo>ag.uuid_generate_v4()</defo>
</column>
<column name="ag_kit_id" type="uuid" length="2147483647" jt="1111" />
<column name="barcode" type="varchar" length="2147483647" jt="12" mandatory="y" />
<column name="survey_id" type="varchar" length="2147483647" jt="12" />
<column name="sample_barcode_file" type="varchar" length="500" jt="12" />
<column name="sample_barcode_file_md5" type="varchar" length="50" jt="12" />
<column name="site_sampled" type="varchar" length="200" jt="12" />
<column name="sample_date" type="date" length="20" jt="91" />
<column name="sample_time" type="time" length="100" jt="92" />
<column name="notes" type="varchar" length="2000" jt="12" />
<column name="environment_sampled" type="varchar" length="100" jt="12" />
<column name="moldy" type="char" length="1" jt="1" />
<column name="overloaded" type="char" length="1" jt="1" />
<column name="other" type="char" length="1" jt="1" />
<column name="other_text" type="varchar" length="2000" jt="12" />
<column name="date_of_last_email" type="varchar" length="20" jt="12" />
<column name="results_ready" type="varchar" length="1" jt="12" />
<column name="withdrawn" type="varchar" length="1" jt="12" />
<column name="refunded" type="varchar" length="1" jt="12" />
<column name="deposited" type="bool" jt="-7" mandatory="y" >
<defo>'F'</defo>
<comment><![CDATA[Deposited to EBI]]></comment>
</column>
<index name="ag_kit_barcodes_pkey" unique="PRIMARY_KEY" >
<column name="ag_kit_barcode_id" />
</index>
<index name="ag_kit_barcodes_barcode_key" unique="UNIQUE" >
<column name="barcode" />
</index>
<index name="ix_ag_kit_bc_kit" unique="NORMAL" >
<column name="ag_kit_id" />
</index>
<index name="idx_ag_kit_barcodes" unique="NORMAL" >
<column name="survey_id" />
</index>
<fk name="fk_ag_kit_barcodes" to_schema="ag" to_table="ag_kit" >
<fk_column name="ag_kit_id" pk="ag_kit_id" />
</fk>
<fk name="fk_ag_kit_barcodes_1" to_schema="ag" to_table="ag_login_surveys" >
<fk_column name="survey_id" pk="survey_id" />
</fk>
<fk name="fk_ag_kit_barcodes_barcode" to_schema="barcodes" to_table="barcode" >
<fk_column name="barcode" pk="barcode" />
</fk>
</table>
<table name="ag_login" >
<column name="ag_login_id" type="uuid" length="2147483647" jt="1111" mandatory="y" >
<defo>ag.uuid_generate_v4()</defo>
</column>
<column name="email" type="varchar" length="100" jt="12" />
<column name="name" type="varchar" length="200" jt="12" />
<column name="address" type="varchar" length="500" jt="12" />
<column name="city" type="varchar" length="100" jt="12" />
<column name="state" type="varchar" length="100" jt="12" />
<column name="zip" type="varchar" length="10" jt="12" />
<column name="country" type="varchar" length="100" jt="12" />
<column name="latitude" type="float8" jt="6" />
<column name="longitude" type="float8" jt="6" />
<column name="cannot_geocode" type="char" length="1" jt="1" />
<column name="elevation" type="float8" jt="6" />
<index name="ag_login_pkey" unique="PRIMARY_KEY" >
<column name="ag_login_id" />
</index>
</table>
<table name="ag_login_surveys" >
<column name="ag_login_id" type="uuid" jt="1111" mandatory="y" />
<column name="survey_id" type="varchar" length="2147483647" jt="12" mandatory="y" />
<column name="participant_name" type="varchar" length="2147483647" jt="12" />
<column name="vioscreen_status" type="integer" jt="4" />
<index name="pk_ag_login_surveys" unique="PRIMARY_KEY" >
<column name="survey_id" />
</index>
<index name="idx_ag_login_surveys" unique="NORMAL" >
<column name="participant_name" />
</index>
<index name="idx_ag_login_surveys_0" unique="NORMAL" >
<column name="ag_login_id" />
<column name="participant_name" />
</index>
<index name="pk_ag_login_surveys_0" unique="UNIQUE" >
<column name="ag_login_id" />
</index>
<fk name="fk_ag_login_surveys" to_schema="ag" to_table="ag_login" >
<fk_column name="ag_login_id" pk="ag_login_id" />
</fk>
<fk name="fk_ag_login_surveys0" to_schema="ag" to_table="ag_consent" >
<fk_column name="ag_login_id" pk="ag_login_id" />
<fk_column name="participant_name" pk="participant_name" />
</fk>
</table>
<table name="consent_revoked" >
<column name="ag_login_id" type="uuid" jt="1111" mandatory="y" />
<column name="participant_name" type="varchar" jt="12" mandatory="y" />
<column name="participant_email" type="varchar" jt="12" mandatory="y" />
<column name="date_revoked" type="date" jt="91" mandatory="y" >
<defo>current_date</defo>
</column>
<index name="idx_consent_revoked" unique="UNIQUE" >
<column name="ag_login_id" />
<column name="participant_name" />
</index>
<index name="idx_consent_revoked_0" unique="NORMAL" >
<column name="ag_login_id" />
</index>
<fk name="fk_consent_revoked" to_schema="ag" to_table="ag_login" >
<fk_column name="ag_login_id" pk="ag_login_id" />
</fk>
</table>
<table name="duplicate_consents" >
<column name="ag_login_id" type="uuid" jt="1111" mandatory="y" />
<column name="main_survey_id" type="varchar" jt="12" mandatory="y" />
<column name="duplicate_survey_id" type="varchar" jt="12" mandatory="y" />
<index name="idx_duplicate_consents" unique="NORMAL" >
<column name="ag_login_id" />
</index>
<index name="idx_duplicate_consents_0" unique="NORMAL" >
<column name="main_survey_id" />
</index>
<index name="idx_duplicate_consents_1" unique="UNIQUE" >
<column name="duplicate_survey_id" />
</index>
<index name="ok_duplicate_consents" unique="PRIMARY_KEY" >
<column name="ag_login_id" />
<column name="main_survey_id" />
<column name="duplicate_survey_id" />
</index>
</table>
<table name="external_survey_answers" >
<comment>This stores answers to third party surveys in JSON format, keyed to the original survey ID</comment>
<column name="survey_id" type="varchar" length="2147483647" jt="12" mandatory="y" />
<column name="external_survey_id" type="bigint" jt="-5" mandatory="y" />
<column name="pulldown_date" type="date" jt="91" mandatory="y" />
<column name="answers" type="json" length="2147483647" jt="12" mandatory="y" />
<index name="pk_third_party_surveys" unique="PRIMARY_KEY" >
<column name="survey_id" />
<column name="external_survey_id" />
<column name="pulldown_date" />
</index>
<fk name="fk_third_party_surveys" to_schema="ag" to_table="ag_login_surveys" >
<fk_column name="survey_id" pk="survey_id" />
</fk>
<fk name="fk_external_survey" to_schema="ag" to_table="external_survey_sources" >
<fk_column name="external_survey_id" pk="external_survey_id" />
</fk>
</table>
<table name="external_survey_sources" >
<column name="external_survey_id" type="bigserial" jt="-5" mandatory="y" />
<column name="external_survey" type="varchar" jt="12" mandatory="y" />
<column name="external_survey_description" type="varchar" jt="12" />
<column name="external_survey_url" type="varchar" jt="12" mandatory="y" />
<index name="pk_external_surveys" unique="PRIMARY_KEY" >
<column name="external_survey_id" />
</index>
</table>
<table name="group_questions" >
<column name="survey_group" type="integer" jt="4" mandatory="y" />
<column name="survey_question_id" type="bigint" jt="-5" mandatory="y" />
<column name="display_index" type="integer" jt="4" mandatory="y" />
<index name="pk_human_survey_group_question" unique="PRIMARY_KEY" >
<column name="survey_group" />
<column name="survey_question_id" />
</index>
<index name="idx_human_survey_group_question" unique="NORMAL" >
<column name="survey_group" />
</index>
<index name="idx_human_survey_group_question_0" unique="NORMAL" >
<column name="survey_question_id" />
</index>
<index name="idx_group_questions" unique="UNIQUE" >
<column name="survey_group" />
<column name="display_index" />
</index>
<fk name="fk_human_survey_group_question" to_schema="ag" to_table="survey_group" >
<fk_column name="survey_group" pk="group_order" />
</fk>
<fk name="fk_human_survey_group_question_0" to_schema="ag" to_table="survey_question" >
<fk_column name="survey_question_id" pk="survey_question_id" />
</fk>
</table>
<table name="iso_country_lookup" >
<comment>ISO standard codes for countries</comment>
<column name="iso_code" type="varchar" length="2147483647" jt="12" mandatory="y" >
<comment><![CDATA[The ISO code for the country]]></comment>
</column>
<column name="country" type="varchar" length="2147483647" jt="12" mandatory="y" />
<column name="ebi" type="varchar" length="3" jt="12" />
<index name="pk_iso_country_lookup" unique="PRIMARY_KEY" >
<column name="iso_code" />
</index>
<index name="idx_iso_country_lookup" unique="NORMAL" >
<column name="country" />
</index>
<fk name="fk_iso_country_lookup" to_schema="ag" to_table="survey_response" >
<fk_column name="country" pk="american" />
</fk>
</table>
<table name="labadmin_access" >
<column name="access_id" type="bigserial" jt="-5" mandatory="y" />
<column name="access_name" type="varchar" jt="12" mandatory="y" />
<column name="access_description" type="varchar" jt="12" mandatory="y" />
<index name="pk_labadmin_access" unique="PRIMARY_KEY" >
<column name="access_id" />
</index>
</table>
<table name="labadmin_users" >
<column name="email" type="varchar" jt="12" mandatory="y" />
<column name="password" type="varchar" jt="12" mandatory="y" />
<index name="pk_labadmin_users" unique="PRIMARY_KEY" >
<column name="email" />
</index>
</table>
<table name="labadmin_users_access" >
<column name="access_id" type="bigint" jt="-5" mandatory="y" />
<column name="email" type="varchar" jt="12" mandatory="y" />
<index name="idx_labadmin_users_access" unique="NORMAL" >
<column name="access_id" />
</index>
<index name="idx_labadmin_users_access" unique="NORMAL" >
<column name="email" />
</index>
<fk name="fk_labadmin_users_access" to_schema="ag" to_table="labadmin_access" >
<fk_column name="access_id" pk="access_id" />
</fk>
<fk name="fk_labadmin_users_access_0" to_schema="ag" to_table="labadmin_users" >
<fk_column name="email" pk="email" />
</fk>
</table>
<table name="settings" >
<column name="test_environment" type="varchar" length="2147483647" jt="12" />
<column name="base_data_dir" type="varchar" length="2147483647" jt="12" />
<column name="locale" type="varchar" length="2147483647" jt="12" />
<column name="current_patch" type="varchar" length="2147483647" jt="12" mandatory="y" >
<defo>'unpatched'::character varying</defo>
</column>
</table>
<table name="source_barcodes_surveys" >
<column name="barcode" type="varchar" jt="12" />
<column name="survey_id" type="varchar" jt="12" />
<index name="idx_source_barcodes_surveys" unique="NORMAL" >
<column name="barcode" />
</index>
<index name="idx_source_barcodes_surveys" unique="NORMAL" >
<column name="survey_id" />
</index>
<fk name="fk_source_barcodes_surveys" to_schema="ag" to_table="ag_kit_barcodes" >
<fk_column name="barcode" pk="barcode" />
</fk>
<fk name="fk_source_barcodes_surveys2" to_schema="ag" to_table="ag_login_surveys" >
<fk_column name="survey_id" pk="survey_id" />
</fk>
</table>
<table name="survey_answers" >
<comment>Stores answers to questions of type SINGLE and MULTIPLE</comment>
<column name="survey_id" type="varchar" length="2147483647" jt="12" mandatory="y" >
<comment><![CDATA[The unique identifier for the survey]]></comment>
</column>
<column name="survey_question_id" type="bigint" jt="-5" mandatory="y" >
<comment><![CDATA[The question being answered]]></comment>
</column>
<column name="response" type="varchar" length="2147483647" jt="12" mandatory="y" >
<comment><![CDATA[The answer the question being asked]]></comment>
</column>
<index name="pk_survey_answers" unique="PRIMARY_KEY" >
<column name="survey_id" />
<column name="survey_question_id" />
<column name="response" />
</index>
<index name="idx_survey_answers" unique="NORMAL" >
<column name="survey_question_id" />
<column name="response" />
</index>
<index name="idx_survey_answers_0" unique="NORMAL" >
<column name="survey_id" />
</index>
<fk name="fk_survey_answers" to_schema="ag" to_table="survey_question_response" >
<fk_column name="survey_question_id" pk="survey_question_id" />
<fk_column name="response" pk="response" />
</fk>
<fk name="fk_survey_answers_0" to_schema="ag" to_table="ag_login_surveys" >
<fk_column name="survey_id" pk="survey_id" />
</fk>
</table>
<table name="survey_answers_other" >
<comment>Survey answers for which there are no corresponding foreign keys</comment>
<column name="survey_id" type="varchar" length="2147483647" jt="12" mandatory="y" />
<column name="survey_question_id" type="bigint" jt="-5" mandatory="y" />
<column name="response" type="varchar" length="2147483647" jt="12" mandatory="y" />
<index name="pk_survey_answers_other" unique="PRIMARY_KEY" >
<column name="survey_id" />
<column name="survey_question_id" />
</index>
<index name="idx_survey_answers_other" unique="NORMAL" >
<column name="survey_id" />
</index>
<index name="idx_survey_answers_other_0" unique="NORMAL" >
<column name="survey_question_id" />
</index>
<fk name="fk_survey_answers_other" to_schema="ag" to_table="ag_login_surveys" >
<fk_column name="survey_id" pk="survey_id" />
</fk>
<fk name="fk_survey_answers_other_0" to_schema="ag" to_table="survey_question" >
<fk_column name="survey_question_id" pk="survey_question_id" />
</fk>
</table>
<table name="survey_group" >
<column name="group_order" type="integer" jt="4" mandatory="y" >
<comment><![CDATA[The order that this group will be displayed in]]></comment>
</column>
<column name="american" type="varchar" length="2147483647" jt="12" >
<comment><![CDATA[The american english version of the question group's name]]></comment>
</column>
<column name="british" type="varchar" length="2147483647" jt="12" />
<index name="idx_human_survey_question_group" unique="UNIQUE" >
<column name="american" />
</index>
<index name="idx_human_survey_question_group_0" unique="UNIQUE" >
<column name="british" />
</index>
<index name="pk_human_survey_question_group" unique="PRIMARY_KEY" >
<column name="group_order" />
</index>
</table>
<table name="survey_question" >
<comment>Stores the human survey questions</comment>
<column name="survey_question_id" type="bigint" jt="-5" mandatory="y" >
<comment><![CDATA[The unique question ID]]></comment>
</column>
<column name="american" type="varchar" length="2147483647" jt="12" >
<comment><![CDATA[The american english version of the question]]></comment>
</column>
<column name="british" type="varchar" length="2147483647" jt="12" >
<comment><![CDATA[The british english version of the question]]></comment>
</column>
<column name="question_shortname" type="varchar" length="100" jt="12" mandatory="y" >
<comment><![CDATA[A QIIME mapping file-compatible header that describes the question and can be used for metadata pulldown]]></comment>
</column>
<column name="retired" type="bool" jt="-7" >
<defo>'F'</defo>
<comment><![CDATA[Whether the question is shown or not]]></comment>
</column>
<index name="pk_human_survey_question" unique="PRIMARY_KEY" >
<column name="survey_question_id" />
</index>
<index name="idx_survey_question" unique="UNIQUE" >
<column name="american" />
</index>
<index name="idx_survey_question_0" unique="UNIQUE" >
<column name="british" />
</index>
<index name="idx_survey_question_1" unique="UNIQUE" >
<column name="question_shortname" />
</index>
</table>
<table name="survey_question_response" >
<comment>Maps questions to responses</comment>
<column name="survey_question_id" type="bigint" jt="-5" mandatory="y" />
<column name="response" type="varchar" length="2147483647" jt="12" mandatory="y" />
<column name="display_index" type="serial" length="10" jt="4" mandatory="y" >
<comment><![CDATA[The display order of this response]]></comment>
</column>
<index name="pk_question_response" unique="PRIMARY_KEY" >
<column name="survey_question_id" />
<column name="response" />
</index>
<index name="idx_survey_question_response" unique="UNIQUE" >
<column name="survey_question_id" />
<column name="display_index" />
</index>
<fk name="fk_question_response" to_schema="ag" to_table="survey_response" >
<fk_column name="response" pk="american" />
</fk>
<fk name="fk_question_response_0" to_schema="ag" to_table="survey_question" >
<fk_column name="survey_question_id" pk="survey_question_id" />
</fk>
</table>
<table name="survey_question_response_type" >
<comment>Stores the type of response for each question</comment>
<column name="survey_question_id" type="bigint" jt="-5" />
<column name="survey_response_type" type="varchar" length="2147483647" jt="12" mandatory="y" />
<index name="idx_human_survey_response_type" unique="NORMAL" >
<column name="survey_question_id" />
</index>
<index name="idx_human_survey_question_response_type" unique="NORMAL" >
<column name="survey_response_type" />
</index>
<fk name="fk_human_survey_response_type" to_schema="ag" to_table="survey_question" >
<fk_column name="survey_question_id" pk="survey_question_id" />
</fk>
<fk name="fk_human_survey_question_response_type" to_schema="ag" to_table="survey_response_types" >
<fk_column name="survey_response_type" pk="survey_response_type" />
</fk>
</table>
<table name="survey_question_triggers" >
<comment>Which question/answer combos trigger other questions</comment>
<column name="survey_question_id" type="bigint" jt="-5" >
<comment><![CDATA[The ID of the question that is triggered]]></comment>
</column>
<column name="triggering_response" type="varchar" length="2147483647" jt="12" >
<comment><![CDATA[The response to the question that will cause the appearance of the triggered_question]]></comment>
</column>
<column name="triggered_question" type="bigint" jt="-5" >
<comment><![CDATA[The question that is triggered]]></comment>
</column>
<index name="idx_human_survey_question_triggered_by" unique="NORMAL" >
<column name="survey_question_id" />
</index>
<index name="idx_human_survey_question_triggered_by_0" unique="NORMAL" >
<column name="triggered_question" />
</index>
<index name="idx_human_survey_question_triggered_by_1" unique="NORMAL" >
<column name="triggering_response" />
</index>
<index name="idx_survey_question_triggered_by" unique="NORMAL" >
<column name="triggered_question" />
<column name="triggering_response" />
</index>
<index name="idx_survey_question_triggers" unique="NORMAL" >
<column name="survey_question_id" />
<column name="triggering_response" />
</index>
<fk name="fk_survey_question_triggers" to_schema="ag" to_table="survey_question" >
<fk_column name="triggered_question" pk="survey_question_id" />
</fk>
<fk name="fk_survey_question_triggers0" to_schema="ag" to_table="survey_question_response" >
<fk_column name="survey_question_id" pk="survey_question_id" />
<fk_column name="triggering_response" pk="response" />
</fk>
</table>
<table name="survey_response" >
<comment>Stores every possible predictable response on the human survey</comment>
<column name="american" type="varchar" length="2147483647" jt="12" mandatory="y" />
<column name="british" type="varchar" length="2147483647" jt="12" />
<index name="pk_human_survey_response" unique="PRIMARY_KEY" >
<column name="american" />
</index>
<index name="idx_human_survey_response" unique="UNIQUE" >
<column name="british" />
</index>
</table>
<table name="survey_response_types" >
<comment>Stores every possible type of response. The response type will be processed in python to determine how the question is represented in the interface.</comment>
<column name="survey_response_type" type="varchar" length="2147483647" jt="12" mandatory="y" />
<index name="pk_human_survey_response_types" unique="PRIMARY_KEY" >
<column name="survey_response_type" />
</index>
</table>
<table name="surveys" >
<column name="survey_id" type="integer" jt="4" mandatory="y" />
<column name="survey_group" type="integer" jt="4" mandatory="y" />
<index name="idx_surveys" unique="NORMAL" >
<column name="survey_group" />
</index>
<index name="idx_surveys_0" unique="PRIMARY_KEY" >
<column name="survey_id" />
<column name="survey_group" />
</index>
<fk name="fk_surveys" to_schema="ag" to_table="survey_group" >
<fk_column name="survey_group" pk="group_order" />
</fk>
</table>
<table name="zipcodes" >
<column name="zipcode" type="varchar" length="2147483647" jt="12" mandatory="y" />
<column name="state" type="varchar" length="2147483647" jt="12" />
<column name="fips_regions" type="varchar" length="2147483647" jt="12" />
<column name="city" type="varchar" length="2147483647" jt="12" />
<column name="latitude" type="float8" jt="6" />
<column name="longitude" type="float8" jt="6" />
<column name="elevation" type="float8" jt="6" />
<column name="cannot_geocode" type="bool" jt="-7" />
<column name="country" type="varchar" length="9" jt="12" />
<index name="zipcodes_pkey" unique="PRIMARY_KEY" >
<column name="zipcode" />
</index>
</table>
<sequence name="external_survey_external_survey_id_seq" start="1" />
<sequence name="survey_question_response_display_index_seq" start="1" />
<function name="ag_add_animal_participant" id="Function7910859" isSystem="false" />
<function name="ag_add_participant" id="Function7910859" isSystem="false" />
<function name="ag_authenticate_user" id="Function7910859" isSystem="false" />
<function name="ag_available_barcodes" id="Function7910860" isSystem="false" />
<function name="ag_check_barcode_status" id="Function7910860" isSystem="false" />
<function name="ag_delete_participant" id="Function7910860" isSystem="false" />
<function name="ag_delete_sample" id="Function7910860" isSystem="false" />
<function name="ag_delete_survey_answer" id="Function7910860" isSystem="false" />
<function name="ag_get_animal_participants" id="Function7910860" isSystem="false" />
<function name="ag_get_barcode_details" id="Function7910860" isSystem="false" />
<function name="ag_get_barcode_md_animal" id="Function7910860" isSystem="false" />
<function name="ag_get_barcode_metadata" id="Function7910860" isSystem="false" />
<function name="ag_get_barcodes" id="Function7910860" isSystem="false" />
<function name="ag_get_barcodes_by_kit" id="Function7910860" isSystem="false" />
<function name="ag_get_barcodes_by_login" id="Function7910860" isSystem="false" />
<function name="ag_get_environmental_samples" id="Function7910860" isSystem="false" />
<function name="ag_get_human_participants" id="Function7910860" isSystem="false" />
<function name="ag_get_kit_details" id="Function7910860" isSystem="false" />
<function name="ag_get_kit_id_by_email" id="Function7910860" isSystem="false" />
<function name="ag_get_kits_by_login" id="Function7910860" isSystem="false" />
<function name="ag_get_logins" id="Function7910860" isSystem="false" />
<function name="ag_get_map_markers" id="Function7910860" isSystem="false" />
<function name="ag_get_next_barcode" id="Function7910860" isSystem="false" />
<function name="ag_get_participant_exceptions" id="Function7910860" isSystem="false" />
<function name="ag_get_participant_samples" id="Function7910861" isSystem="false" />
<function name="ag_get_print_results" id="Function7910861" isSystem="false" />
<function name="ag_get_survey_details" id="Function7910861" isSystem="false" />
<function name="ag_insert_barcode" id="Function7910861" isSystem="false" />
<function name="ag_insert_kit" id="Function7910861" isSystem="false" />
<function name="ag_insert_login" id="Function7910861" isSystem="false" />
<function name="ag_insert_participant_exception" id="Function7910861" isSystem="false" />
<function name="ag_insert_survey_answer" id="Function7910861" isSystem="false" />
<function name="ag_is_handout" id="Function7910861" isSystem="false" />
<function name="ag_log_participant_sample" id="Function7910861" isSystem="false" />
<function name="ag_reassign_barcode" id="Function7910861" isSystem="false" />
<function name="ag_set_pass_change_code" id="Function7910861" isSystem="false" />
<function name="ag_stats" id="Function7910861" isSystem="false" />
<function name="ag_update_barcode" id="Function7910861" isSystem="false" />
<function name="ag_update_geo_info" id="Function7910861" isSystem="false" />
<function name="ag_update_kit" id="Function7910861" isSystem="false" />
<function name="ag_update_kit_password" id="Function7910861" isSystem="false" />
<function name="ag_update_login" id="Function7910861" isSystem="false" />
<function name="ag_verify_kit_status" id="Function7910861" isSystem="false" />
<function name="ag_verify_password_change_code" id="Function7910861" isSystem="false" />
<function name="american_gut_consent_submit" id="Function7910862" isSystem="false" />
<function name="get_barcode_proj_type" id="Function7910862" isSystem="false" />
<function name="get_project_names" id="Function7910862" isSystem="false" />
<function name="set_barcode_proj_type" id="Function7910862" isSystem="false" />
<function name="update_akb" id="Function7910862" isSystem="false" />
<function name="update_barcode_status" id="Function7910862" isSystem="false" />
<function name="uuid_generate_v4" id="Function7910862" isSystem="false" />
</schema>
<schema name="barcodes" catalogname="ag_test" schemaname="barcodes" >
<table name="barcode" >
<column name="barcode" type="varchar" length="2147483647" jt="12" mandatory="y" />
<column name="assigned_on" type="timestamp" length="29" decimal="6" jt="93" >
<comment><![CDATA[date barcode assigned to a project]]></comment>
</column>
<column name="status" type="varchar" length="100" jt="12" />
<column name="scan_date" type="date" length="20" jt="91" />
<column name="sample_postmark_date" type="date" length="20" jt="91" />
<column name="biomass_remaining" type="varchar" length="1" jt="12" />
<column name="sequencing_status" type="varchar" length="20" jt="12" />
<column name="obsolete" type="varchar" length="1" jt="12" />
<column name="create_date_time" type="timestamp" jt="93" mandatory="y" >
<defo>current_timestamp</defo>
<comment><![CDATA[Date barcode created on the system]]></comment>
</column>
<index name="barcode_pkey" unique="PRIMARY_KEY" >
<column name="barcode" />
</index>
</table>
<table name="plate" >
<column name="plate_id" type="bigint" length="19" jt="-5" mandatory="y" />
<column name="plate" type="varchar" length="50" jt="12" />
<column name="sequence_date" type="varchar" length="20" jt="12" />
<index name="plate_pkey" unique="PRIMARY_KEY" >
<column name="plate_id" />
</index>
</table>
<table name="plate_barcode" >
<column name="plate_id" type="bigint" length="19" jt="-5" mandatory="y" />
<column name="barcode" type="varchar" length="2147483647" jt="12" mandatory="y" />
<index name="idx_plate_barcode" unique="NORMAL" >
<column name="barcode" />
</index>
<index name="idx_plate_barcode_0" unique="NORMAL" >
<column name="plate_id" />
</index>
<fk name="fk_plate_barcode" to_schema="barcodes" to_table="barcode" >
<fk_column name="barcode" pk="barcode" />
</fk>
<fk name="fk_plate_barcode_0" to_schema="barcodes" to_table="plate" >
<fk_column name="plate_id" pk="plate_id" />
</fk>
</table>
<table name="project" >
<column name="project_id" type="bigint" length="19" jt="-5" mandatory="y" />
<column name="project" type="varchar" length="1000" jt="12" />
<index name="project_pkey" unique="PRIMARY_KEY" >
<column name="project_id" />
</index>
</table>
<table name="project_barcode" >
<column name="project_id" type="bigint" length="19" jt="-5" mandatory="y" />
<column name="barcode" type="char" length="9" jt="1" mandatory="y" />
<index name="project_barcode_pkey" unique="PRIMARY_KEY" >
<column name="project_id" />
<column name="barcode" />
</index>
<fk name="fk_pb_to_barcode" to_schema="barcodes" to_table="barcode" >
<fk_column name="barcode" pk="barcode" />
</fk>
<fk name="fk_pb_to_project" to_schema="barcodes" to_table="project" >
<fk_column name="project_id" pk="project_id" />
</fk>
</table>
</schema>
<schema name="information_schema" catalogname="ag" schemaname="information_schema" >
<function name="_pg_char_max_length" id="Function2849398" isSystem="false" />
<function name="_pg_char_octet_length" id="Function2849398" isSystem="false" />
<function name="_pg_datetime_precision" id="Function2849398" isSystem="false" />
<function name="_pg_expandarray" id="Function2849398" isSystem="false" />
<function name="_pg_index_position" id="Function2849398" isSystem="false" />
<function name="_pg_interval_type" id="Function2849398" isSystem="false" />
<function name="_pg_keysequal" id="Function2849398" isSystem="false" />
<function name="_pg_numeric_precision" id="Function2849398" isSystem="false" />
<function name="_pg_numeric_precision_radix" id="Function2849398" isSystem="false" />
<function name="_pg_numeric_scale" id="Function2849398" isSystem="false" />
<function name="_pg_truetypid" id="Function2849398" isSystem="false" />
<function name="_pg_truetypmod" id="Function2849398" isSystem="false" />
</schema>
<schema name="pg_catalog" catalogname="ag" schemaname="pg_catalog" >
<function name="RI_FKey_cascade_del" id="Function2850037" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_cascade_del"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_cascade_del$function$
]]></string>
<comment><![CDATA[referential integrity ON DELETE CASCADE]]></comment>
</function>
<function name="RI_FKey_cascade_upd" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_cascade_upd"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_cascade_upd$function$
]]></string>
<comment><![CDATA[referential integrity ON UPDATE CASCADE]]></comment>
</function>
<function name="RI_FKey_check_ins" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_check_ins"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_check_ins$function$
]]></string>
<comment><![CDATA[referential integrity FOREIGN KEY ... REFERENCES]]></comment>
</function>
<function name="RI_FKey_check_upd" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_check_upd"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_check_upd$function$
]]></string>
<comment><![CDATA[referential integrity FOREIGN KEY ... REFERENCES]]></comment>
</function>
<function name="RI_FKey_noaction_del" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_noaction_del"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_noaction_del$function$
]]></string>
<comment><![CDATA[referential integrity ON DELETE NO ACTION]]></comment>
</function>
<function name="RI_FKey_noaction_upd" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_noaction_upd"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_noaction_upd$function$
]]></string>
<comment><![CDATA[referential integrity ON UPDATE NO ACTION]]></comment>
</function>
<function name="RI_FKey_restrict_del" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_restrict_del"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_restrict_del$function$
]]></string>
<comment><![CDATA[referential integrity ON DELETE RESTRICT]]></comment>
</function>
<function name="RI_FKey_restrict_upd" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_restrict_upd"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_restrict_upd$function$
]]></string>
<comment><![CDATA[referential integrity ON UPDATE RESTRICT]]></comment>
</function>
<function name="RI_FKey_setdefault_del" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_setdefault_del"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_setdefault_del$function$
]]></string>
<comment><![CDATA[referential integrity ON DELETE SET DEFAULT]]></comment>
</function>
<function name="RI_FKey_setdefault_upd" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_setdefault_upd"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_setdefault_upd$function$
]]></string>
<comment><![CDATA[referential integrity ON UPDATE SET DEFAULT]]></comment>
</function>
<function name="RI_FKey_setnull_del" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_setnull_del"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_setnull_del$function$
]]></string>
<comment><![CDATA[referential integrity ON DELETE SET NULL]]></comment>
</function>
<function name="RI_FKey_setnull_upd" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog."RI_FKey_setnull_upd"()
RETURNS trigger
LANGUAGE internal
STRICT
AS $function$RI_FKey_setnull_upd$function$
]]></string>
<comment><![CDATA[referential integrity ON UPDATE SET NULL]]></comment>
</function>
<function name="abbrev" id="Function2850038" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abbrev(cidr)
RETURNS text
LANGUAGE internal
IMMUTABLE STRICT
AS $function$cidr_abbrev$function$
CREATE OR REPLACE FUNCTION pg_catalog.abbrev(inet)
RETURNS text
LANGUAGE internal
IMMUTABLE STRICT
AS $function$inet_abbrev$function$
]]></string>
<comment><![CDATA[abbreviated display of inet value]]></comment>
</function>
<function name="abbrev_001" id="Function2850039" isSystem="false" >
<comment><![CDATA[abbreviated display of cidr value]]></comment>
</function>
<function name="abs" id="Function2850039" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abs(real)
RETURNS real
LANGUAGE internal
IMMUTABLE STRICT
AS $function$float4abs$function$
CREATE OR REPLACE FUNCTION pg_catalog.abs(double precision)
RETURNS double precision
LANGUAGE internal
IMMUTABLE STRICT
AS $function$float8abs$function$
CREATE OR REPLACE FUNCTION pg_catalog.abs(bigint)
RETURNS bigint
LANGUAGE internal
IMMUTABLE STRICT
AS $function$int8abs$function$
CREATE OR REPLACE FUNCTION pg_catalog.abs(integer)
RETURNS integer
LANGUAGE internal
IMMUTABLE STRICT
AS $function$int4abs$function$
CREATE OR REPLACE FUNCTION pg_catalog.abs(smallint)
RETURNS smallint
LANGUAGE internal
IMMUTABLE STRICT
AS $function$int2abs$function$
CREATE OR REPLACE FUNCTION pg_catalog.abs(numeric)
RETURNS numeric
LANGUAGE internal
IMMUTABLE STRICT
AS $function$numeric_abs$function$
]]></string>
<comment><![CDATA[absolute value]]></comment>
</function>
<function name="abs_001" id="Function2850039" isSystem="false" >
<comment><![CDATA[absolute value]]></comment>
</function>
<function name="abs_002" id="Function2850039" isSystem="false" >
<comment><![CDATA[absolute value]]></comment>
</function>
<function name="abs_003" id="Function2850039" isSystem="false" >
<comment><![CDATA[absolute value]]></comment>
</function>
<function name="abs_004" id="Function2850039" isSystem="false" >
<comment><![CDATA[absolute value]]></comment>
</function>
<function name="abs_005" id="Function2850039" isSystem="false" >
<comment><![CDATA[absolute value]]></comment>
</function>
<function name="abstime" id="Function2850039" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abstime(timestamp without time zone)
RETURNS abstime
LANGUAGE internal
STABLE STRICT
AS $function$timestamp_abstime$function$
CREATE OR REPLACE FUNCTION pg_catalog.abstime(timestamp with time zone)
RETURNS abstime
LANGUAGE internal
IMMUTABLE STRICT
AS $function$timestamptz_abstime$function$
]]></string>
<comment><![CDATA[convert timestamp with time zone to abstime]]></comment>
</function>
<function name="abstime_001" id="Function2850039" isSystem="false" >
<comment><![CDATA[convert timestamp to abstime]]></comment>
</function>
<function name="abstimeeq" id="Function2850040" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abstimeeq(abstime, abstime)
RETURNS boolean
LANGUAGE internal
IMMUTABLE STRICT
AS $function$abstimeeq$function$
]]></string>
<comment><![CDATA[implementation of = operator]]></comment>
</function>
<function name="abstimege" id="Function2850040" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abstimege(abstime, abstime)
RETURNS boolean
LANGUAGE internal
IMMUTABLE STRICT
AS $function$abstimege$function$
]]></string>
<comment><![CDATA[implementation of >= operator]]></comment>
</function>
<function name="abstimegt" id="Function2850040" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abstimegt(abstime, abstime)
RETURNS boolean
LANGUAGE internal
IMMUTABLE STRICT
AS $function$abstimegt$function$
]]></string>
<comment><![CDATA[implementation of > operator]]></comment>
</function>
<function name="abstimein" id="Function2850040" isSystem="false" >
<comment><![CDATA[I/O]]></comment>
</function>
<function name="abstimele" id="Function2850040" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abstimele(abstime, abstime)
RETURNS boolean
LANGUAGE internal
IMMUTABLE STRICT
AS $function$abstimele$function$
]]></string>
<comment><![CDATA[implementation of <= operator]]></comment>
</function>
<function name="abstimelt" id="Function2850040" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abstimelt(abstime, abstime)
RETURNS boolean
LANGUAGE internal
IMMUTABLE STRICT
AS $function$abstimelt$function$
]]></string>
<comment><![CDATA[implementation of < operator]]></comment>
</function>
<function name="abstimene" id="Function2850040" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abstimene(abstime, abstime)
RETURNS boolean
LANGUAGE internal
IMMUTABLE STRICT
AS $function$abstimene$function$
]]></string>
<comment><![CDATA[implementation of <> operator]]></comment>
</function>
<function name="abstimeout" id="Function2850040" isSystem="false" >
<comment><![CDATA[I/O]]></comment>
</function>
<function name="abstimerecv" id="Function2850040" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abstimerecv(internal)
RETURNS abstime
LANGUAGE internal
IMMUTABLE STRICT
AS $function$abstimerecv$function$
]]></string>
<comment><![CDATA[I/O]]></comment>
</function>
<function name="abstimesend" id="Function2850040" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.abstimesend(abstime)
RETURNS bytea
LANGUAGE internal
IMMUTABLE STRICT
AS $function$abstimesend$function$
]]></string>
<comment><![CDATA[I/O]]></comment>
</function>
<function name="aclcontains" id="Function2850040" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.aclcontains(aclitem[], aclitem)
RETURNS boolean
LANGUAGE internal
IMMUTABLE STRICT
AS $function$aclcontains$function$
]]></string>
<comment><![CDATA[contains]]></comment>
</function>
<function name="acldefault" id="Function2850040" isSystem="false" >
<string><![CDATA[CREATE OR REPLACE FUNCTION pg_catalog.acldefault("char", oid)
RETURNS aclitem[]
LANGUAGE internal
IMMUTABLE STRICT
AS $function$acldefault_sql$function$
]]></string>
<comment><![CDATA[TODO]]></comment>
</function>