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<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8" />
<title>
Qurro
</title>
<link rel="shortcut icon" href="images/logos/icon.png" />
<link rel="stylesheet" href="css/qurro_docs.css" />
</head>
<body>
<div class="centeredBlock">
<h1>
Qurro: Quantitative Rank/Ratio Observations
</h1>
<img id="logo" src="images/logos/qurro_logo.png" alt="Qurro logo" />
<!-- TODO: sync the README with this page -->
<p>
A software tool created by the
<a href="https://knightlab.ucsd.edu/"
>Knight Lab at UC San Diego</a
>. For details, please see Qurro's
<a href="https://github.com/biocore/qurro">GitHub page</a>.
</p>
<p>
This page contains demos of Qurro on various datasets.
</p>
</div>
<h2>Demos</h2>
<table class="datasetTable">
<tr>
<th>Demo Name</th>
<th>Briefly: What was this study looking at?</th>
<th>Feature Type</th>
<th>Ranking Tool Used</th>
<th>Demo Link</th>
<th>Dataset Citation</th>
</tr>
<tr>
<td>Moving Pictures</td>
<td>Changes in human microbiota over time</td>
<td>ASVs</td>
<td>DEICODE</td>
<td><a href="demos/q2_moving_pictures/index.html">Here</a></td>
<td>
<a
href="https://genomebiology.biomedcentral.com/articles/10.1186/gb-2011-12-5-r50"
>Caporaso et al. 2011</a
>
</td>
</tr>
<tr>
<td>Byrd</td>
<td>
Metagenomics of the skin microbiome with respect to atopic
dermatitis
</td>
<td>Taxa</td>
<td>Songbird</td>
<td><a href="demos/byrd/index.html">Here</a></td>
<td>
<a
href="http://stm.sciencemag.org/content/9/397/eaal4651.short"
>Byrd et al. 2017</a
>; processing done in
<a href="https://www.nature.com/articles/s41467-019-10656-5"
>Morton/Marotz et al. 2019</a
>
</td>
</tr>
<tr>
<td>Sleep Apnea</td>
<td>Intermittent hypoxia and hypercapnia in mice</td>
<td>ASVs</td>
<td>DEICODE</td>
<td><a href="demos/sleep_apnea/index.html">Here</a></td>
<td>
<a
href="https://msystems.asm.org/content/3/3/e00020-18.abstract"
>Tripathi et al. 2018</a
>
</td>
</tr>
<tr>
<td>Red Sea</td>
<td>
Metagenomic and environmental covariation in the Red Sea
</td>
<td>KEGG orthologs</td>
<td>Songbird</td>
<td><a href="demos/red_sea/index.html">Here</a></td>
<td>
<a href="https://www.nature.com/articles/ismej201699"
>Thompson et al. 2017</a
>
</td>
</tr>
<tr>
<td>Mackerel</td>
<td>
Mucosal microbiota of pacific chub mackerel
</td>
<td>ASVs</td>
<td>Songbird</td>
<td><a href="demos/mackerel/index.html">Here</a></td>
<td>
<a
href="https://journals.asm.org/doi/full/10.1128/mSphere.00401-20"
>Minich et al. 2020</a
>; differentials generated
<a
href="https://github.com/knightlab-analyses/qurro-mackerel-analysis"
>in this analysis</a
>
</td>
</tr>
</table>
</body>
</html>