ModuleNotFoundError: No module named 'songbird.q2'

[michoug]

Hi,
I installed your software in a conda environment where qiime2 was already installed following the 2/3 commands. Then when I type qiime dev refresh-cache I got this error

Traceback (most recent call last):
  File "/Users/michoug/miniconda3/envs/qiime2/bin/qiime", line 11, in <module>
    sys.exit(qiime())
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/click/core.py", line 764, in __call__
    return self.main(*args, **kwargs)
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/click/core.py", line 717, in main
    rv = self.invoke(ctx)
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/click/core.py", line 1137, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/click/core.py", line 1137, in invoke
    return _process_result(sub_ctx.command.invoke(sub_ctx))
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/click/core.py", line 956, in invoke
    return ctx.invoke(self.callback, **ctx.params)
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/click/core.py", line 555, in invoke
    return callback(*args, **kwargs)
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/q2cli/dev.py", line 27, in refresh_cache
    import q2cli.cache
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/q2cli/cache.py", line 301, in <module>
    CACHE = DeploymentCache()
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/q2cli/cache.py", line 61, in __init__
    self._state = self._get_cached_state(refresh=refresh)
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/q2cli/cache.py", line 107, in _get_cached_state
    self._cache_current_state(current_requirements)
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/q2cli/cache.py", line 200, in _cache_current_state
    state = self._get_current_state()
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/q2cli/cache.py", line 238, in _get_current_state
    plugin_manager = qiime2.sdk.PluginManager()
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/qiime2/sdk/plugin_manager.py", line 44, in __new__
    self._init()
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/qiime2/sdk/plugin_manager.py", line 59, in _init
    plugin = entry_point.load()
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2346, in load
    return self.resolve()
  File "/Users/michoug/miniconda3/envs/qiime2/lib/python3.6/site-packages/pkg_resources/__init__.py", line 2352, in resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
ModuleNotFoundError: No module named 'songbird.q2'

Any ideas ?

[mortonjt]

Hi @michoug thank you for reporting. This error is popping up likely because there is no conda recipe for this at the moment. That is currently happening on conda-forge here

The workaround to this is

git clone https://github.com/biocore/songbird.git
cd songbird
pip install -e .
qiime dev refresh-cache

Will update once recipe is in.

[michoug]

Thanks a lot @mortonjt
It worked

[mortonjt]

@michoug , thanks for raising this issue. Now that there is a conda recipe in, I'm going to resolve this issue. Feel free to open if this problem pops up again.