An implementation of the strided state UniFrac algorithm (manuscript in prep).
To install, first the binary needs to be compiled. This assumes that the HDF5 toolchain and libraries are available. More information about how to setup the stack can be found here.
Assuming h5c++ is in your path, the following should work:
pip install -e .
Note: if you are using conda we recommend installing HDF5 using the
conda-forge channel, for example:
conda install -c conda-forge hdf5