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sambamba markdup too many open files issue #177
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try |
Agreed, enlarging the |
A simple idea would be to merge intermediate files once there are too many of them. That's on my to-do list. |
still got too many open files error after using "--overflow-list-size 600000" in a large batch sample running. can the number in "600000" be increased. what is the upper threshold? or is there any limits related to this count? e.g. memory size |
@wuyilei: as it is stated in the linked nextflow issue, setting There is no upper threshold, and another suggestion is to increase |
Isn't Potentially also |
Inactive |
Any ideas how to overcome this issue?
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