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Workflows and code for the Systems Immunogenetics project

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.gitattributes
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README.md
README.md
 
 
SIG_Array_QA_QC_Workflow.ipynb
SIG_Array_QA_QC_Workflow.ipynb
 
 
SIG_Array_QA_QC_Workflow.r
SIG_Array_QA_QC_Workflow.r
 
 
SIG_Genome_Cache_Workflow.ipynb
SIG_Genome_Cache_Workflow.ipynb
 
 
SIG_Genome_Cache_Workflow.r
SIG_Genome_Cache_Workflow.r
 
 
SIG_QTL_Mapping_Workflow.ipynb
SIG_QTL_Mapping_Workflow.ipynb
 
 
SIG_QTL_Mapping_Workflow.r
SIG_QTL_Mapping_Workflow.r
 
 
SIG_WNV_Flow_Data_Cleaning.ipynb
SIG_WNV_Flow_Data_Cleaning.ipynb
 
 
SIG_WNV_Flow_Data_Cleaning.r
SIG_WNV_Flow_Data_Cleaning.r
 
 
SIG_WNV_Flow_Data_Plotting.ipynb
SIG_WNV_Flow_Data_Plotting.ipynb
 
 
SIG_WNV_Flow_Data_Plotting.r
SIG_WNV_Flow_Data_Plotting.r
 
 
SIG_WNV_Histology_Data_Cleaning.ipynb
SIG_WNV_Histology_Data_Cleaning.ipynb
 
 
SIG_WNV_Histology_Data_Cleaning.r
SIG_WNV_Histology_Data_Cleaning.r
 
 
SIG_WNV_qPCR_Data_Cleaning.ipynb
SIG_WNV_qPCR_Data_Cleaning.ipynb
 
 
SIG_WNV_qPCR_Data_Cleaning.r
SIG_WNV_qPCR_Data_Cleaning.r
 
 

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SIG

Workflows and code for the Systems Immunogenetics project

Contents

  1. Phenotypic Data Cleaning and Plotting
  2. Expression Array Analysis
  3. QTL Mapping Analysis
  4. Data Visualizations

Phenotypic Data Cleaning

Flow Cytometry

Flow Cytometry Data Cleaning Workflow @ Jupyter nbviewer

Flow Cytometry Data Plots @ Jupyter nbviewer

Histology Data

Histology Data Cleaning Workflow @ Jupyter nbviewer

qPCR Data

qPCR Data Cleaning Workflow @ Jupyter nbviewer

qPCR Data Plots @ Jupyter nbviewer

Expression Array Analysis

Array QA/QC Workflow

Array QA/QC Workflow @ Jupyter nbviewer

QTL Mapping Analysis

QTL Mapping Workflow @ Jupyter nbviewer

Data Visualizations

SIG Shiny Apps

http://www.systemsimmunogenetics.org/data_viz.html

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Workflows and code for the Systems Immunogenetics project

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