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bioforensics

The National Biodefense Analysis and Countermeasures Center (NBACC) is a one-of-a-kind facility dedicated to defending the nation against biological threats.

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  1. pytaxonkit pytaxonkit Public

    Python bindings for the TaxonKit library

    Python 26 2

  2. lusSTR lusSTR Public

    Tool to convert ForenSeq sequence strings to various annotation types for downstream analyses

    Python 7

  3. MicroHapulator MicroHapulator Public

    Tools for empirical microhaplotype calling, forensic interpretation, and simulation.

    Python 6 1

  4. MicroHapDB MicroHapDB Public

    Portable database of microhaplotype marker and allele frequency data

    Python 8 3

  5. rsidx rsidx Public

    Library for indexing VCF files for random access searches by rsID

    Python 15 2

  6. blast-validate blast-validate Public

    BLAST-based validation of metagenomic sequence assignments

    Perl 7 4

Repositories

Showing 10 of 18 repositories
  • lusSTR Public

    Tool to convert ForenSeq sequence strings to various annotation types for downstream analyses

    bioforensics/lusSTR’s past year of commit activity
    Python 7 0 1 0 Updated Jul 10, 2024
  • yeat Public

    YEAT: Your Everyday Assembly Tool

    bioforensics/yeat’s past year of commit activity
    Python 1 0 16 0 Updated Jul 2, 2024
  • claspy Public

    Cell line authentication with STRs in Python

    bioforensics/claspy’s past year of commit activity
    Python 0 0 2 0 Updated Jun 28, 2024
  • MicroHapDB Public

    Portable database of microhaplotype marker and allele frequency data

    bioforensics/MicroHapDB’s past year of commit activity
    Python 8 3 4 0 Updated Jun 28, 2024
  • pytaxonkit Public

    Python bindings for the TaxonKit library

    bioforensics/pytaxonkit’s past year of commit activity
    Python 26 2 1 0 Updated Jun 28, 2024
  • MicroHapulator Public

    Tools for empirical microhaplotype calling, forensic interpretation, and simulation.

    bioforensics/MicroHapulator’s past year of commit activity
    Python 6 1 7 0 Updated Jun 28, 2024
  • rsidx Public

    Library for indexing VCF files for random access searches by rsID

    bioforensics/rsidx’s past year of commit activity
    Python 15 2 1 0 Updated Aug 14, 2023
  • snakemake-wrappers Public Forked from snakemake/snakemake-wrappers

    This is the development home of the Snakemake wrapper repository, see

    bioforensics/snakemake-wrappers’s past year of commit activity
    Perl 0 177 0 0 Updated Oct 21, 2020
  • asm_tools Public

    Assembly utility scripts used to assemble bacterial isolates sequenced on Illumina paired-end sequencers

    bioforensics/asm_tools’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Aug 15, 2020
  • CMash Public Forked from dkoslicki/CMash

    Fast and accurate set similarity estimation via containment min hash

    bioforensics/CMash’s past year of commit activity
    Python 0 BSD-3-Clause 9 0 0 Updated Apr 7, 2020
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