Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Move halo field to output tensor specification #77

Merged
merged 1 commit into from
Apr 26, 2021
Merged
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Jump to
Jump to file
Failed to load files.
Diff view
Diff view
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -89,7 +89,7 @@ Must be a list of *tensor specification keys*.
- `reference_input` name of the reference input tensor
- `scale` list of factors 'output_pix/input_pix' for each dimension
- `offset` position of origin wrt to input
- `halo` the halo to crop from the output tensor (for example to crop away boundary efects or for tiling). The halo should be croped from both sides, i.e. `shape_after_crop = shape - 2 * halo`. The `halo` is not cropped by the bioimage.io model, but is left to be cropped by the consumer software. Use `offset` if the model output itself is cropped.
- `halo` \[optional\] (only for output) the halo to crop from the output tensor (for example to crop away boundary efects or for tiling). The halo should be croped from both sides, i.e. `shape_after_crop = shape - 2 * halo`. The `halo` is not cropped by the bioimage.io model, but is left to be cropped by the consumer software. Use `shape:offset` if the model output itself is cropped.
- `preprocessing` \[optional\] (only for input) list of transformations describing how this input should be preprocessed. Each entry has these keys:
- `name` name of preprocessing (see [supported_formats_and_operations.md#preprocessing](https://github.com/bioimage-io/configuration/blob/master/supported_formats_and_operations.md#preprocessing) for valid names).
- `kwargs` \[optional\] key word arguments for `preprocessing`.
Expand Down