Allen 172 part 1

bioimagesuiteweb · Aug 1, 2023 · eab8504 · eab8504
1 parent 881bfcb
commit eab8504
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Showing 6 changed files with 24 additions and 0 deletions.
diff --git a/various/connatlas/allen2023/2023_left.vtk b/various/connatlas/allen2023/2023_left.vtk
diff --git a/various/connatlas/allen2023/2023_right.vtk b/various/connatlas/allen2023/2023_right.vtk
diff --git a/various/connatlas/allen2023/setup.json b/various/connatlas/allen2023/setup.json
@@ -0,0 +1,15 @@
+{
+    "multires" : [
+        "output/right_allen_172.json" ,
+        "output/left_allen_172.json"
+    ],
+    "atlas"   : [
+        "output/right_allen_172.json" ,
+        "output/left_allen_172.json"
+    ],
+    "output"  : [
+        "output/lobes_allen_right_172.json" ,
+        "output/lobes_allen_left_172.json" ,
+        "output/allen_172_surface_atlas.bin.gz"
+    ]
+}
diff --git a/various/connatlas/allen2023/setup.tcl b/various/connatlas/allen2023/setup.tcl
@@ -0,0 +1,9 @@
+
+puts stdout "parsing setup for 368 atlas"
+
+set surface_names { "2023_right.vtk"  "2023_left.vtk" }
+set atlas_names {  "2023_right.vtk" "2023_left.vtk" }
+set output_names { "output/right_allen_172" "output/left_allen_172" }
+set output_offsets { 1 1 }
+set surface_points_ras 1
+set distance_threshold 36.0
diff --git a/web/images/allen_172.nii.gz b/web/images/allen_172.nii.gz
diff --git a/web/images/allen_172_surface_atlas.bin.gz b/web/images/allen_172_surface_atlas.bin.gz