Fix IO

biointec · Mar 2, 2016 · d9df760 · d9df760
1 parent 05431cb
commit d9df760
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Showing 3 changed files with 510 additions and 267 deletions.
diff --git a/CMakeLists.txt b/CMakeLists.txt
@@ -10,44 +10,44 @@ add_definitions("-DJABBA_MAJOR_VERSION=${${PROJECT_NAME}_MAJOR_VERSION}")
 add_definitions("-DJABBA_MINOR_VERSION=${${PROJECT_NAME}_MINOR_VERSION}")
 add_definitions("-DJABBA_PATCH_LEVEL=${${PROJECT_NAME}_PATCH_LEVEL}")
 
-# set the default configuration to Release
-if(NOT CMAKE_BUILD_TYPE)
-        set(CMAKE_BUILD_TYPE "Release" CACHE STRING
-            "Choose the type of build, options are: Debug Release RelWithDebInfo MinSizeRel." FORCE)
-endif(NOT CMAKE_BUILD_TYPE)
-
-# set the module path
-set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake")
-
-# set some definitions
-add_definitions("-DMAXKMERLENGTH=127")
-add_definitions("-DCATEGORIES=2")
-add_definitions("-DBROWNIE_MAJOR_VERSION=${${PROJECT_NAME}_MAJOR_VERSION}")
-add_definitions("-DBROWNIE_MINOR_VERSION=${${PROJECT_NAME}_MINOR_VERSION}")
-add_definitions("-DBROWNIE_PATCH_LEVEL=${${PROJECT_NAME}_PATCH_LEVEL}")
-
-# set windows specific flags
-if (MSVC)
-        add_definitions("-D_SCL_SECURE_NO_WARNINGS")
-        add_definitions("-D_CRT_SECURE_NO_WARNINGS")
-endif (MSVC)
-
-# set g++ specific flags
-if (CMAKE_COMPILER_IS_GNUCXX OR CMAKE_COMPILER_IS_GNUCC)
-        set(CMAKE_CXX_FLAGS "-Wno-deprecated -std=c++11 -static-libgcc -static-libstdc++")
-        set(CMAKE_CXX_FLAGS_DEBUG "-O0 -g3 -Wall -pedantic -Wno-long-long -Wno-deprecated -Wall -Wextra -Wno-sign-compare")
-        set(CMAKE_CXX_FLAGS_RELEASE "-O3")
-        set(CMAKE_CXX_FLAGS_RELWITHDEBINFO "-O2 -g3")
-        set(CMAKE_C_FLAGS_DEBUG "-O0 -g3 -Wall -pedantic -Wno-long-long")
-endif (CMAKE_COMPILER_IS_GNUCXX OR CMAKE_COMPILER_IS_GNUCC)
-
-# uncomment the portion below to disable assertions
-if (CMAKE_BUILD_TYPE STREQUAL Release)
-        add_definitions(-DNDEBUG)
-else (CMAKE_BUILD_TYPE STREQUAL Release)
-        add_definitions(-DDEBUG)
-endif (CMAKE_BUILD_TYPE STREQUAL Release)
-
-set(CMAKE_VERBOSE_MAKEFILE ON)
-
-add_subdirectory(src)
+# set the default configuration to Release
+if(NOT CMAKE_BUILD_TYPE)
+        set(CMAKE_BUILD_TYPE "Release" CACHE STRING
+            "Choose the type of build, options are: Debug Release RelWithDebInfo MinSizeRel." FORCE)
+endif(NOT CMAKE_BUILD_TYPE)
+
+# set the module path
+set(CMAKE_MODULE_PATH "${CMAKE_SOURCE_DIR}/cmake")
+
+# set some definitions
+add_definitions("-DMAXKMERLENGTH=127")
+add_definitions("-DCATEGORIES=2")
+add_definitions("-DBROWNIE_MAJOR_VERSION=${${PROJECT_NAME}_MAJOR_VERSION}")
+add_definitions("-DBROWNIE_MINOR_VERSION=${${PROJECT_NAME}_MINOR_VERSION}")
+add_definitions("-DBROWNIE_PATCH_LEVEL=${${PROJECT_NAME}_PATCH_LEVEL}")
+
+# set windows specific flags
+if (MSVC)
+        add_definitions("-D_SCL_SECURE_NO_WARNINGS")
+        add_definitions("-D_CRT_SECURE_NO_WARNINGS")
+endif (MSVC)
+
+# set g++ specific flags
+if (CMAKE_COMPILER_IS_GNUCXX OR CMAKE_COMPILER_IS_GNUCC)
+        set(CMAKE_CXX_FLAGS "-Wno-deprecated -std=c++11")
+        set(CMAKE_CXX_FLAGS_DEBUG "-O0 -g3 -Wall -pedantic -Wno-long-long -Wno-deprecated -Wall -Wextra -Wno-sign-compare")
+        set(CMAKE_CXX_FLAGS_RELEASE "-O3")
+        set(CMAKE_CXX_FLAGS_RELWITHDEBINFO "-O2 -g3")
+        set(CMAKE_C_FLAGS_DEBUG "-O0 -g3 -Wall -pedantic -Wno-long-long")
+endif (CMAKE_COMPILER_IS_GNUCXX OR CMAKE_COMPILER_IS_GNUCC)
+
+# uncomment the portion below to disable assertions
+if (CMAKE_BUILD_TYPE STREQUAL Release)
+        add_definitions(-DNDEBUG)
+else (CMAKE_BUILD_TYPE STREQUAL Release)
+        add_definitions(-DDEBUG)
+endif (CMAKE_BUILD_TYPE STREQUAL Release)
+
+set(CMAKE_VERBOSE_MAKEFILE ON)
+
+add_subdirectory(src)